LOCUS AEG54202.1 527 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 FGGY-family pentulose kinase protein.
ACCESSION CP002781-2427
PROTEIN_ID AEG54202.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_2486"
/EC_number="2.7.1.16"
/inference="protein motif:TFAM:TIGR01315"
/note="TIGRFAM: Carbohydrate kinase, FGGY-related; KEGG:
smd:Smed_2351 FGGY-family pentulose kinase; PFAM:
Carbohydrate kinase, FGGY, N-terminal; Carbohydrate
kinase, FGGY, C-terminal"
/transl_table=11
/db_xref="GO:0016987"
/db_xref="InterPro:IPR006003"
/db_xref="InterPro:IPR018484"
/db_xref="InterPro:IPR018485"
BEGIN
1 MRNYVVAVDI GTGSARAGVF DRRGKLLARA DRTIAMNRPE ENHAEHDSED IWAAVCGAVR
61 SAREKAAVPA ESIAAIGFDA TCSLVVRDRD GAPLSVNRQG EARWDTIVWL DHRALAEADF
121 CTATKHPVLD HSGRVMSPEM EMPKLMWLKR NLPQQWERAG YFFDLADYMS WRSTGSTARS
181 RCTLTAKWNY LAHERRGWQQ DYLEQIGLED LLERGGLPEE TLPVERAVGR LSASAAEELG
241 LDTGCQVAPG LIDAYAGALG VLGGFADAPA KLERQLALIG GTSSCIVAFS KDMKPGFGMW
301 GPYFEAVLPG LWLIEGGQSA TGALLDHIVR LHGGGLPPTT ETHAKIIERV QEMRAVHGAD
361 FAQRLHVLPD FHGNRSPLAD PHALGVISGL PLDSSFDALC RLYWRTCVAI ALGIRHILEM
421 MKEAGYELDT LHVTGGHVRN PLLMELYCDV TGCRVVAPQA PDAVLLGTAM TAAVAGELYP
481 DLASAGPAMS SAGTERLPDP ALRRIYDRDY RRFLALYRHR EELEAME
//