LOCUS AEG54144.1 753 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 TonB-dependent receptor protein.
ACCESSION CP002781-2369
PROTEIN_ID AEG54144.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_2427"
/inference="protein motif:PFAM:PF00593"
/note="PFAM: TonB-dependent receptor, beta-barrel;
TonB-dependent receptor, plug; KEGG: mmr:Mmar10_0023
TonB-dependent receptor"
/transl_table=11
/db_xref="GO:0004872"
/db_xref="GO:0005215"
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR012910"
BEGIN
1 MILWRSSASR LAIVVGAGFW SMPILVQAQE APKENRTLLA PIVVTADKSD AFAIGGSVQR
61 LDLTDMERFS YSDPNRVLRQ IPGVYLQEEE GFGLRPNIGI RGSGTDRNAR ITVMEDGILI
121 APAPYAAPAA YYFPKMARMS GVEVAKGPAA IKYGPMTVGG AINLFSTPIP DSDIGTLTGK
181 ADILGGSYGG RRVHAWTGGW APLGDAFEIG GLIEGLYDKS DGFKDIDRGG DTGFDLTDWG
241 GKLGFRTADG TQNFEFKYQN YDETSNETYL GLTLDDFKDT PFRRYNASQK DVIDAAHNIY
301 QFSHSYEITP DINLTTTVYR TDTTRAWYKL NDVRNDSDTG WVSLSNILAD PDTYSTQMAD
361 IVGADGYTGR AGALRVRNNA RAYQATGIQS VLTTNFDTGE LSHELELSAR YHQDEEDRFQ
421 QDDRYQMVNG RMILTSAGAP GSQSNRLNEA KAWAFFARDT IEAGPFTFVP GLRYESINLD
481 QTNWGSADPG RNGPTTAKQS YVDVFIPGLS ATWSATDEVL LVAGVHRGFA SPAPGSDVDP
541 ETSWNYESGV KYDSDGWRAG AIGFINSYSN LLGTCTASTG GNCTIGDQFE AGEVSVKGIE
601 LTVGRTFGSI DSNGFEVPVT LAYTYTNARF RSSFESDYDL WGEVTAGDEL PYTPQNQITV
661 GVGLEMERAR LNTLINWVDV ARAMAGSGPI AESDRVDSRI LVDLSAEIDL SPNMKLYGVA
721 QNLFNKTYNA GFSPSGARPG APLTVMAGIR SRF
//