LOCUS AEG54081.1 667 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 DNA primase protein.
ACCESSION CP002781-2306
PROTEIN_ID AEG54081.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_2364"
/inference="protein motif:TFAM:TIGR01391"
/note="KEGG: smd:Smed_2227 DNA primase; TIGRFAM: DNA
primase, DnaG; PFAM: DNA primase, catalytic core,
N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA
primase, DnaB-helicase binding domain"
/transl_table=11
/db_xref="GO:0003896"
/db_xref="InterPro:IPR002694"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR006295"
/db_xref="InterPro:IPR013264"
/db_xref="InterPro:IPR019475"
BEGIN
1 MRFSPSFLDE IRDRVPISDV IGKRVTWDRR KTNVSRGDYW ACCPFHGEKS PSFHCEDRKG
61 RYHCFGCGVS GDHFRFLTEL EGLSFPEAVQ QIADLAGVPM PQPDPQAEQR ERERTSLLDV
121 MELATQFFQD QLQTANGAKA RAYLRERGLT GRTIETFRLG FAPDSRNALK EFLAGKGIGK
181 EQIEACGLVV HGDGIPVSYD RFRDRIMFPI PSAREKVIAF GGRAMSPDAP AKYLNSNETE
241 LFHKGNVLFN FARARRASQG ADGAGTIIAV EGYMDVIALH QAGIENAVAP LGTALTENQL
301 DLLWKMTTQP VLCFDGDGAG VRAAHRAVDL ALPHLKPGRS VRFALLPEGK DPDDVVRHDG
361 REPFDKVLAN ARSLADMVWQ REVQGGDFDT PEKRAELEAR LRQVTSVIAD ESVRRHYGQD
421 MRDRLNAFLQ GSAPFRGERR PFERGGRQAG RQGGRGWSPA PNPVMGAAVE AGTAGSSKLN
481 QMLKAGGSLR PPVLRESVLA LTIVNHPQLL FDEYDEIATI EFDHRDLQRC WAAVLNAAAA
541 NGLRLTRETL MEQLEAEGFS ALIGALDQQV RYARLWTATA AAAPEDAREG YLQALTLHRR
601 TKALLWQKRE LEREIAEATA SEDVEQGQRL VRAMEEVQLE LHRMDKLEAI IEGFGVLSGR
661 VKGPAAR
//