LOCUS AEG54077.1 684 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 RNA polymerase, sigma 70 subunit,
RpoD protein.
ACCESSION CP002781-2302
PROTEIN_ID AEG54077.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_2360"
/inference="protein motif:TFAM:TIGR02393"
/note="KEGG: smd:Smed_2223 RNA polymerase sigma factor
RpoD; TIGRFAM: RNA polymerase sigma factor RpoD,
C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase
sigma-70 region 3; RNA polymerase sigma factor 70, region
1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase
sigma factor 70, non-essential domain; RNA polymerase
sigma-70 region 2; RNA polymerase sigma-70 region 4"
/transl_table=11
/db_xref="GO:0003677"
/db_xref="GO:0003700"
/db_xref="GO:0016987"
/db_xref="InterPro:IPR007127"
/db_xref="InterPro:IPR007624"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR007631"
/db_xref="InterPro:IPR009042"
/db_xref="InterPro:IPR012760"
/db_xref="InterPro:IPR014284"
BEGIN
1 MATKVKENEE ADVEREGAPD GPLLDLSDDA VKKMIKAAKK RGYVTMDELN SVLPSEEVTS
61 EQIEDTMSML SDMGINVIED EEAEEAAASD DDDGADEGES EGGELAPASG TALAASKKKE
121 PTDRTDDPVR MYLREMGSVE LLSREGEIAI AKRIEAGRET MIAGLCESPL TFQALIIWRD
181 ELNEGQTLLR EIIDLETTYS GPEAKAAPQF QSPEKIEADR KAAEEKEKVR RTRTAANDDD
241 ITNVGGEGQA PEEEEEDDDE SNLSLAAMEA ELRPQVMETL DVIAETYKKL RKLQDQQVEA
301 RLAATGTLSP AQERRYKELK DELIKAVKSL SLNQNRIDAL VEQLYDISKR LTQNEGRLLR
361 LAESYGVKRE AFLEQYSGAE LDPNWMKSIS NLAGKGWKEF ARAENQTIRD IRQEIQNLAT
421 ETGISIAEFR RIVSMVQKGE REARIAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN
481 IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKIVRTSRQ
541 MLHEIGREPT PEELAEKLAM PLEKVRKVLK IAKEPISLET PVGDEEDSHL GDFIEDKNAL
601 LPIDAAIQAN LRETTTRVLA SLTPREERVL RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ
661 IEAKALRKLK HPSRSRKLRS FLDS
//