LOCUS AEG53733.1 885 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 TonB-dependent heme/hemoglobin
receptor family protein protein.
ACCESSION CP002781-1958
PROTEIN_ID AEG53733.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_2009"
/inference="protein motif:TFAM:TIGR01785"
/note="TIGRFAM: TonB-dependent haem/haemoglobin receptor;
TonB-dependent haemoglobin/transferrin/lactoferrin
receptor; PFAM: TonB-dependent receptor, beta-barrel;
TonB-dependent receptor, plug; Secretin/TonB, short
N-terminal; KEGG: atu:Atu3385 heme receptor; SMART:
Secretin/TonB, short N-terminal"
/transl_table=11
/db_xref="GO:0004872"
/db_xref="GO:0005215"
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR010949"
/db_xref="InterPro:IPR011276"
/db_xref="InterPro:IPR011662"
/db_xref="InterPro:IPR012910"
BEGIN
1 MAYGAASKRD TQFTTRYLRG FLLSTSAAIA VVCTAPQLAA QEIAATPQQS QAVRNFDIPS
61 QPLASALALF NRQSGIQISQ AAAGRTSNVT TRAVRGRMTP EQALAQLLDG TGVHYQFTAN
121 RAAVIGPAGD AGAPGSEEGA TVLKRIVVTG KTGRNANSGA GFQGTPDWVY EEPASVSVVS
181 RDAVQSRAAR NANDVLDSVA GVTSNRSEAQ NPGIAINVRG LQDQNRVTTM IDGARQDFQR
241 AGHGASQRVY VDTAFLRSVE VEKGAVAGVG GAGSLGGAVN FRTVTADDII KPDRDRGVEL
301 NAETGTNAYY FNGSLIGAAR FSEDFSVLGG ISRKRVGDYD FGQNGKSPLL DLAVTTAVDD
361 SFLFSRLETF GTLLKVEGSP SDDFTFDLSW LRNDSEAIQG GLVFGDLRDD PQNYLNNTVS
421 SSFEWDPDSE LIDLKGRLWY NRVVNDELRD YTPRLPITYA MTSFGGSLDN TSRFETALGD
481 LSLNYGGEAY SDNGKTTTPP LVDDQGFDEA YGYKGLNPVG RRSMTSAFLN ATLEHDDWLE
541 VGAGLRYDRY RLKGFTEVGG RKPRYIVVPG VCGYFYDDGE CAYYDEAPVY GGGEAVLERV
601 DIDKSGGALL PSARIAVMPF EGIQPFVTYA HTYRPPSVME ALTSGGHPGD AIATYIPNPY
661 LKPERGRTWE LGINIARDGL FTAGDSLRLK TVYFDRTIQD YITLGNGYFA TFDKNLFQHV
721 NLDGDTTMNG VEIEASYDMG SAYVGASYTY LKTDYADTYS YSGPTASGTP LAASGNTPVP
781 SVLFVPPENK FTLDAGIRLF ERKLVLGGRA TYVSDSKPTV GQLAGLFNTA GYKVFDIYGS
841 YSFSDSAKLR LAINNVTDEQ YAPALGAFYY PAPGRTATVS LNFKF
//