LOCUS AEG53456.1 2089 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 chemotaxis sensory transducer protein.
ACCESSION CP002781-1681
PROTEIN_ID AEG53456.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1721"
/inference="similar to AA sequence:KEGG:Smed_1538"
/note="KEGG: smd:Smed_1538 chemotaxis sensory transducer"
/transl_table=11
/db_xref="InterPro:IPR000074"
BEGIN
1 MATKKTNESI DEKAFQALEA ALKIDFDDLK SALNDETSLE EPVPENVSET ARQAAGSGEA
61 RAARAQQEAP KPARGAEAPR SFASEMAPKQ PPLAPANDDT RKSPAAMLRS LEVRSSRAAI
121 RVAAIISLVW TVAGLGVAHL LYAPGIWQIR SLGDLAAMPG AIGILLGIAL PVMLFFSFAI
181 MIARAQELRS AARSMAEVAM RLAEPETNAA DRVMTVGQAV RREVSAMNEG IERTIARATE
241 LEALVHSEVS ALERSYSENE LRVRTLVQEL GLEREAIIGH SDRIRTAIAG AHTKLKDDLE
301 TASEDIASRI AVSGEAFASL IDTRAAALTD KSDHALENLS TMLTTRTDAL LSGLTTAGVA
361 LSNEFDARLD ALSDNLTQRG EQLLSQFETR ASTLDANTEK LNAALNERAR QLNETLIART
421 RDLNESLRIG QQAISGGLDD VLSSLNSALD EMGASFRQSL KSSADDAIMD LDLRGGFFEE
481 KLQTTVGQLA SAFDERFHEF ASAFDKRASQ LDTKLMESLH RINETVSGGS EAIGGALDSS
541 VDKINSALSE QSLTLATALG ATQDFIEETI GSRTSELSSL IGNAHNRIES VLSDKTGSLM
601 GALTEAQERI ENGFGQRADA LANALTTSER SLTDGLDSRT SAFIEGLQSA HARIEQTLTG
661 STDEITSAIA ASQHRLDNTL SERTAALSTA LTSGASVIES AVGGTADRLE RVLSERGQTI
721 TDALSTQTAA LDGVLAERAT QINSTMSARA SEMADSLSRH AEDVADSLTF RAMAVAETMT
781 DRVGEIENKL SQSVSEVAEN LGGRVSLIAD TLTDTSARIA EDLSSRVGKI SETLAGTSAE
841 IAEALTARTS EATASLAGKA AEIEQTLTGR ASHLRDTLTT THDQIRSTLD DRITAINLAV
901 GQGREQLEEL LSDQSMAMAT TLATSASMLE MSLEERQASI AGAIERSTEA LAARTSEATA
961 SLADKATEID RTLSGKAAQL RDTLATTHEQ LRTTLDDRIN TINLSVGQGR ERLEELLSDQ
1021 SIAMATTLAT SASMLEMSLE ERQASIAGAI DRSAEALDSR MRSTTGEIAE RLAETADQIS
1081 LAADTLTNRV DISISGVNSR LDETGARIET SLGSLEERIR GSVGDVDAIL GETGSRIETS
1141 LGSLEERIRG SVGDVDAILG DTGARIETSL GSLEERIRDS VGSVNAIVDN AGQRIADSLG
1201 ERAGEIDRIS EAAATRISTA IETGTGRIEE RLGTMDRALN IGLENVNRTI EGKAAALVTS
1261 LRGAVSDATQ EIDAEAARSA GLLSKAGADF AGALAASNAE FASSIEQTAS ATAARHADLA
1321 RSVAEAADTA TARLASTNSQ IATHAKSIQQ SLTEAEKALD ARGQSIRSTL DESTRELNSM
1381 LAGRSMELSR LLDEQARPVI EQYAATGKEA AERIASLTQE SADRLRAENA ALINAITERT
1441 GETLDAISLR AEETAKAMKM VENRLQSTAM GLIDQLASSN SAIATVIDQA SGNLGDMDQR
1501 LEATAAKVSE TARQASDMLS TSTRLIEGKV DKLSDISSST LSQIGGIVGR FEDHSKVLGQ
1561 ASDLLAAAQS NLVSTLEERQ DALRTLSVGL VQRSEEIERT MRALEGFVDG AFQRAEERSG
1621 QVAGNLRSGI QSSFSDVGRL LSNTEQRATE AAEALRDTLV KASDEAAASV EGVFSQAEER
1681 SRQIADRLRS GVETSFADAN KTLSQVEGRA LSASEALRQV MAKTGEEAGQ ALEGAFASVE
1741 ERAKDAASRL RGTIGASVSD VERMLAESGK KSDGVAAQLR EAVRQAIEDA IGRFNGATDD
1801 IRRSAGEIRK ELDMTREELK RGAFDLPEEA KENAALMRRA VGEQIKALQE LSEIIGKSSS
1861 QLEVAQPVRQ QEAPAAPAAR VVAPQAAAPQ VAAPQPAAPQ PAPNAALRGS LGIEQATRPL
1921 QPARPPATEE RAEEGGGWMR DLLRAASREE EPAAARPRSA ESQPVAKAGD SRNPRHVVES
1981 LNSLSVDIAR AIDHDASVEL WRRYQRGERD VFTRRLYTLK GQQTFDEIKR KYDREPEFRT
2041 AVDRYIADFE KLLADVARND PDKRITQTYL TSDTGKVYTM LAHAAGRFS
//