LOCUS AEG53442.1 869 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 multi-sensor hybrid histidine
kinase protein.
ACCESSION CP002781-1667
PROTEIN_ID AEG53442.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1707"
/inference="protein motif:TFAM:TIGR00229"
/note="TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding
domain; Signal transduction response regulator, receiver
domain; PAS fold-4; Signal transduction histidine kinase,
subgroup 1, dimerisation/phosphoacceptor domain; KEGG:
smd:Smed_1525 multi-sensor hybrid histidine kinase; SMART:
ATPase-like, ATP-binding domain; Signal transduction
response regulator, receiver domain; PAS; Signal
transduction histidine kinase, subgroup 1,
dimerisation/phosphoacceptor domain"
/transl_table=11
/db_xref="GO:0004871"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR013656"
BEGIN
1 MTKLRQAGDY QMPVVDRGVR PGTILRIILL AIVLTASAAA FVVFKDQLEN EIVLGILGVL
61 AMVGIFFLVS SVIGFIEVMP QSRPDELARA FLDAHEDGTI VTDRKGRIIY ANAAYGALTG
121 TKSAAGIQSL ETILSRNREA TEAIYRLTNG LHEGKQGHEE FRLLKPLANG KVAGSGAHWY
181 RLKARVLPLE DAGSNPLYLW QIADITAERD EQERFFKELQ NAIDYLDHAP AGFFSAGRKG
241 EIFYINATLA DWLGIDLTKF QPGSVSIADL VAGEGLALVQ SVQAEPGLKK TKILDLDLRK
301 ANGQSLPVRL IHRVSSARDG APGESRTIVM SREGDDGDQS ASNAAMRFTR FFNNTPMAIA
361 SVDGNGRILR TNAPFMKLFA GLVSQDEVER GAVIDAVVHQ SERGRLQESL AAAKDRQSDI
421 APIDALHPKD EGRHFRFYVN AVIDQSDQAP EEAAIIYALE ITEQKALENQ MAQTQKMNAV
481 GTLAGGIAHD FNNVLTAILL SADHLLLSAR PADATFADLM EIKRNANRAA VLVRQLLAFS
541 RKQTMRPTVL NLTDVIGDLR MLVDRMTGTN VKVEVDYGRD LWPVKTDLGQ FEQVLLNLAV
601 NARDAMPAGG IITLRTRNLP ASEVAALGRR ELPEEDFVMV EVSDQGTGIP PEIMDKIFEP
661 FFTTKDVGKG TGLGLSMVYG IVKQSGGYIY PESEIGSGTT FRILLPRHVD IPETQDDDAS
721 AAQSAAPARS EPVAVPMPRA EPADLTGDSA VVLLVEDEEA VRRGGKRMLE TRGYTVHEAG
781 SGIEALEIMD ELDGAVDIVV SDVVMPEMDG PTLLRELRKT YPDLKFIFVS GYAEDAFARN
841 LPADAKFGFL PKPFSLKQLA VAVREMLDS
//