LOCUS AEG53366.1 611 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 poly(R)-hydroxyalkanoic acid
synthase, class I protein.
ACCESSION CP002781-1591
PROTEIN_ID AEG53366.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1629"
/inference="protein motif:TFAM:TIGR01838"
/note="KEGG: smd:Smed_1456 poly(R)-hydroxyalkanoic acid
synthase, class I; TIGRFAM: Poly(R)-hydroxyalkanoic acid
synthase, class I; PFAM: Poly-beta-hydroxybutyrate
polymerase, N-terminal; Alpha/beta hydrolase fold-1"
/transl_table=11
/db_xref="GO:0008415"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR010941"
/db_xref="InterPro:IPR010963"
BEGIN
1 MTAEKAEGAT GFAGFDPKSV EPYIVKDPES LAINMARAAE QLGKAASAWL APREAGEKTD
61 SFAEPVSDMV KTLSKVSEYW LSDPRRTLEA QTHLLGSFFD MWSRTLQRMA GDAVEDPANL
121 QRNDKRFADE DWVKNPFFDF IRQAYFVTSD WAERMVRDAE GLDDHTRHKA AFYVRQIASA
181 LSPTNFITTN PQLYRETVAS SGANLVKGMQ MLAEDIAAGR GELRLRQTDT SKFAIGENIA
241 ITPGKVIAQN DVCQVLQYEA STETVLKRPL LICPPWINKF YVLDLNPEKS FIKWAVDQGQ
301 TVFVISWVNP DERHASKDWE AYAREGIGFA LDIIEQATGE REVNSIGYCV GGTLLAATLA
361 LHAAEGDERI RSATLFTTQV DFTHAGDLKV FVDDDQIRHL EANMSATGYL EGSKMASAFN
421 MLRASELIWP YFVNNYLKGQ DPLPFDLLYW NSDSTRMPAA NHSFYLRNCY LENRLSKGEM
481 VLAGRRVSLG DVKIPIYNLA TKEDHIAPAK SVFLGSSSFG GKVTFVLSGS GHIAGVVNPP
541 ARSKYQYWTG GAPKGDIETW MGKAKETAGS WWPHWQGWVE RLDKRRVPAR KAGGPLNSIE
601 EAPGSYVRVR A
//