LOCUS AEG53195.1 1263 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 ribonucleoside-diphosphate
reductase, adenosylcobalamin-dependent protein.
ACCESSION CP002781-1420
PROTEIN_ID AEG53195.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1450"
/EC_number="1.17.4.1"
/inference="protein motif:TFAM:TIGR02504"
/note="TIGRFAM: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; KEGG: smd:Smed_1233
ribonucleotide-diphosphate reductase subunit alpha; PFAM:
Ribonucleotide reductase class II vitamin B12-dependent;
Ribonucleotide reductase large subunit, C-terminal"
/transl_table=11
/db_xref="GO:0000166"
/db_xref="GO:0004748"
/db_xref="GO:0031419"
/db_xref="InterPro:IPR000788"
/db_xref="InterPro:IPR013344"
/db_xref="InterPro:IPR013678"
BEGIN
1 MKIERRFTKA GQSAYAEIEF RKATSEIKNP DGSVVFRLAD IDVPAQFSQV AADILAQKYF
61 RKAGVPAKLK RVEENDVPSF LWRSVPDNDA LKALPKEEQY GSETDARQVF DRLAGTWAYW
121 GWKGGYFDTE EDASAFRDEL AYMLATQRVA PNSPQWFNTG LHWAYGIDGP GQGHFYVDPF
181 TGKLTKSKSA YEHPQPHACF IQSVADDLVN EGGIMDLWVR EARLFKYGSG TGSNFSHLRA
241 EGERLSGGGK SSGLMSFLKI GDRAAGAIKS GGTTRRAAKM VVVDIDHPDI EEYINWKVKE
301 EQKVAALVTG SKIVAKHLKA IMKACINCDG SDDACFDPKQ NPALKREIRA AKQALVPENY
361 VKRVIQFARQ GYKDIQFKTY DTDWDSEAYL TVSGQNSNNS VSIKDDFLRA VEADGDWHLT
421 ARKDGRVMKT LKARDLWESI SHAAWASADP GLHFNTTMND WHTCPAAGPI RASNPCSEYM
481 FLDDTACNLA SLNLMQFKDA ATKRINIGDY EHAVRLWTVV LEVSVMMAQF PSREIAELSY
541 EYRTLGLGYA NIGGLLMSSG IPYDSPEGRA IAGALTAIMT GVAYATSAEI SAKLGPFPGF
601 APNRDNMLRV MRNHRRAAHG ETAGYEGLSV NPVALVHGDC PDQDLIAHAK GAWDKAVELG
661 EKHGYRNAQA TVIAPTGTIG LVMDCDTTGI EPDFALVKFK KLAGGGYFKI INRAVPEALR
721 TLGYSESQIA EMEAYAVGHG NLNQAPAINP TTLKAKGFTD EKIEAVNAAL KAAFDIKFVF
781 NQWTLGADFL KETLKVSDEQ LASMDFNLLE HLGFSRKDIE AANIHVCGAM TLEGAPFLKA
841 EHLPVFDCAN PCGKIGKRYL SVESHIRMMA AAQPFISGAI SKTINMPNEA TVEDCKNAYM
901 LSWKLALKAN ALYRDGSKLS QPLNASLIED EEDEDAIEEL MQAPAAAQAV AVTEKIIERV
961 IEKVVRAREK LPNRRQGYTQ KAIVGGHKVY LRTGEFGDGR LGEIFIDMHK EGAAFRAMMN
1021 NFAIAISLGL QYGVPLEEYV EAFTFTKFEP AGMVQGNDAI KNATSILDYV FRELAVSYLG
1081 RHDLAHVDTS DFSNTALGRG IQEGKTNLVS TGWTRGYKPS IVGGTGERSE PKGASTAAPA
1141 RASAGASVTS ISGNAVRKLE PAIAAATSEV VAFKRDYEER AVELAEEIAE EAEQEVTALF
1201 SDKAAAEAAA AKSEAKKVEA ERRARSIMQG YTGNMCSECQ NFTMVRNGTC EKCDTCGATS
1261 GCS
//