LOCUS AEG53116.1 1683 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 phage tape measure protein protein.
ACCESSION CP002781-1341
PROTEIN_ID AEG53116.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1369"
/inference="protein motif:TFAM:TIGR02675"
/note="TIGRFAM: Tape measure domain; KEGG: mfa:Mfla_2689
hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR013491"
BEGIN
1 MARKNEVDLV IKAENQFSKT LKSAVDAFNE FQTILKGTTG DTGKANTALG QLATQAGSLA
61 QKLRGLKSVE TIAKSMDELT ASAERSQASV NKMSGDYAKL SKELVAAEKN LGDLKTKLQQ
121 EESALQAIKD RTAAARDEKK RFTDQVTAAR ESLAKYNAEL KKTPNPGPAQ KSAGVFLRGD
181 VEAARTANTA SVKSTQAAVQ QLGEAAAKQA AAVKAAEDAF KAAEGQTKKL KGESDRLTRS
241 LKDEQSALEG VNRELSRTRE ISAQVSAVSG GAAVTQERVT REYAKQAAEL ARVNAQIQEF
301 SKAQAAPVAT DRRGVLTSKR AFVEAQAEVK RLADEMRRAE APTEELAAAL GRAQARAKQA
361 ADAYQANSIA LRRTAATQTS LSQFLSRTAT AQQQAATRQV KALAQANQAS QQGASANRQL
421 AAATQSALPP IRQLAQAAQT AGAAAQQAAN GTRNLRSAFA GLYGESRQSL SLFQRIRGEV
481 LALTASYIGL HAAIGQIRGV VTAFQTIEAA QSRLGVVFNQ DTSRVANELA FLERNAQRLG
541 ISFEVLSNQY SKFAVAANAA NFTSTATRDI FLSVAEAGRV NKLSMDQLNG VFLALEQMIS
601 KGKVSSEELR RQLGDRLAGA FTIFADAIGV STSELDDMLR KGEVIADQAN LLKFADELKK
661 RFGPQLGAAL ATTTAELGRF QNNLFQAQLR VGEGGFIEAF TDGVRRLNEF FQSREGRDFF
721 LSIGTALAKA TQALVAFMPY MDELAKAIGL IALFKVSRFF ADMVTSLRTT AAATATANAN
781 LFTWQSTVQA VNGKWNAFAA SLTVGTGALA RVNAQLRVAT VVAGTAGSGF LALRIGLNAL
841 TTLAGVAAGA FRLLWAAIGG LPGLILTGVT VALGSWLTGV EDTTTALDEH KRIMGEVITS
901 YEAVKGKTKE WAQEVRNVTL DQAVANLRTM QTNLEKVRQT FLDIDRMPTT IIRDPVDFKL
961 AQQIRDVRDA YKDGTISAKD FVTQLETLYR QISNDGVRQW AEELLNVGRN LADMEKGVGE
1021 AALVAKELGD KTAETNAIVA KTGITIEKVT EVVEDAGKAM EAVAEEKAKK FNEAMEEMGK
1081 LIPSVADELK RLETIKGLEE QYTQAIKLAG SFEDLVRAHD RYQNAVTAQT FGNLGGTGNE
1141 ASFNLIRRFE GFAPTAKWDQ NAFRAGFGSD TVTLSDGTIK KVTEGMTVTM TDAVRDLVRR
1201 VDEFTMVARS QLGPDRFDSF SAQQQAVFTS LAYNYGDLKS TGALNTFQTG SVEEIAEAIR
1261 KLGSHNGGIN SRRRNQEADL FASGGDFSER QYQVERKRLD TQREYNTELE DRLSLQENEN
1321 ANEGRLTQEA FIQKRLAEEQ KKAKEAGVAL TAEQIERVKA VAAEEWKVTQ AKRDQKTEAK
1381 DANTALREAQ ALEQQRNALL AQYRQAVQTG DVAAQETLKG QITSLNQEIV AAAESARAMW
1441 EAIGGPEAAA KLPILDALIT KAKTAGNQIG IVGRQTNSLG LTANQTQQLV GSFADGLVGV
1501 FDNFAQAVAN GQNAFQALGT AFLQFAATFL REIATMILKQ MILNALAGFG GPIGQAAAAL
1561 GGAVPVAHGG GTVGSTVRSR RVDPGIFSVA SYYHGGGVAG LKSNEVPAIL ERGETIRTEA
1621 QEQALQDRMA AGQGGGGGAQ VIRNIVTLDE DSARNWLTSS SGEQAIWSVL GRDKAKLRSL
1681 TAK
//