LOCUS AEG52892.1 1401 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 DNA-directed RNA polymerase
subunit beta' protein.
ACCESSION CP002781-1117
PROTEIN_ID AEG52892.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1141"
/inference="protein motif:HAMAP:MF_01322"
/note="SMART: RNA polymerase, N-terminal; TIGRFAM:
DNA-directed RNA polymerase, subunit beta-prime; KEGG:
smd:Smed_0979 DNA-directed RNA polymerase subunit beta';
HAMAP: DNA-directed RNA polymerase, subunit beta-prime;
PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha
subunit; RNA polymerase Rpb1, domain 3; RNA polymerase
Rpb1, domain 4; RNA polymerase Rpb1, domain 5"
/transl_table=11
/db_xref="InterPro:IPR000722"
/db_xref="InterPro:IPR006592"
/db_xref="InterPro:IPR007066"
/db_xref="InterPro:IPR007080"
/db_xref="InterPro:IPR007081"
/db_xref="InterPro:IPR007083"
/db_xref="InterPro:IPR012754"
BEGIN
1 MNQEVMNLFN PQVPAQTFDS IRISIASPEK ILSWSYGEIK KPETINYRTF KPERDGLFCA
61 RIFGPIKDYE CLCGKYKRMK YKGIICEKCG VEVTLSRVRR ERMGHIELAA PVAHIWFLKS
121 LPSRIATLLD MTLKDIERVL YFENYIVTEP GLTSLKENQL LSEEEYMIAV DEFGEDQFTA
181 MIGAEAIYEM LASMNLEKIA GDLRSEMAET TSDLKQKKLM KRLKIVENFM ESGNRPEWMI
241 MKVVPVIPPD LRPLVPLDGG RFATSDLNDL YRRVINRNNR LKRLIELRAP GIIIRNEKRM
301 LQESVDALFD NGRRGRVITG ANKRPLKSLS DMLKGKQGRF RQNLLGKRVD YSGRSVIVTG
361 PELKLHQCGL PKKMALELFK PFIYARLDAK GYSSTVKQAK KLVEKEKPEV WDILDEVIRE
421 HPVLLNRAPT LHRLGIQAFE PILVEGKAIQ LHPLVCTAFN ADFDGDQMAV HVPLSLEAQL
481 EARVLMMSTN NILHPANGAP IIVPSQDMVL GLYYLSIMNQ NEPGEGMAFS DMGELHHALE
541 TKAVTLHAKI RGRYKTVDAE GNPVSKIYET TPGRMIIGEL LPKNPNVPFE TCNQEMTKKN
601 ISKMIDTVYR HCGQKDTVIF CDRIMQLGFS HACRAGISFG KDDMVIPDTK VKIVGDTEAL
661 VKEYEQQYND GLITQGEKYN KVVDAWGKAT EKVAEEMMAR IKAVEFDDSG RQKPMNSIYM
721 MSHSGARGSP NQMRQLGGMR GLMAKPSGEI IETPIISNFK EGLTVNEYFN STHGARKGLA
781 DTALKTANSG YLTRRLVDVA QDCIVTHTDC GTDKGLTMTA IVDAGQVVAS IGQRILGRTA
841 LDNIDNPVTG ERIVDAGKMI LEPDVVAIEK AGIQSVRIRS ALTCEIQTGV CGVCYGRDLA
901 RGTPVNMGEA VGVIAAQSIG EPGTQLTMRT FHLGGTATVV DQSFLEASYE GTVQIKNRNM
961 LRNSDGVLVA MGRNMAIQIL DERGVERSSQ RVAYGSKIFV DDGDKVKRGQ RFAEWDPYTR
1021 PMMTEVEGTV HFEDVVDGIS VLESTDESTG ITKRQVIDWR STPRGTDLKP AIVIKDKNGN
1081 IAKLARGGEA RFMLSVDAIL SVEPGQKVSQ GDVLARSPLE SAKTKDITGG LPRVAELFEA
1141 RRPKDHAIIA EIDGTIRFGR DYKNKRRVMI EPAEDGVEPV EYLIPKGKPF HLQDGDYIEK
1201 GDYILDGNPA PHDILAIKGV EALASYLVNE IQEVYRLQGV VINDKHIEVI VRQMLQKVEI
1261 TDAGDSTYIV GDNVDRIELE DVNDSLLAEG KKPAFGEPVL LGITKASLQT PSFISAASFQ
1321 ETTKVLTEAA VAGKTDNLQG LKENVIVGRL IPAGTGGTMT QIRRIATARD ELILEERRKG
1381 TGAESATPML ADMANDPAAA E
//