LOCUS AEG52847.1 894 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 DNA topoisomerase I protein.
ACCESSION CP002781-1072
PROTEIN_ID AEG52847.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1096"
/EC_number="5.99.1.2"
/inference="protein motif:TFAM:TIGR01051"
/note="SMART: DNA topoisomerase, type IA, DNA-binding; DNA
topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM:
DNA topoisomerase I, bacterial-type; KEGG: smd:Smed_0932
DNA topoisomerase I; PFAM: DNA topoisomerase, type IA,
central; Toprim domain; DNA topoisomerase, type IA, zn
finger"
/transl_table=11
/db_xref="GO:0003677"
/db_xref="GO:0003917"
/db_xref="InterPro:IPR003601"
/db_xref="InterPro:IPR003602"
/db_xref="InterPro:IPR005733"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR013497"
/db_xref="InterPro:IPR013498"
BEGIN
1 MNVVVVESPS KAKTINKYLG PGYKVLASFG HVRDLPAKDG SVRPDEDFEM SWEVDGASAK
61 RMKDIADAVK SSDGLILATD PDREGEAISW HVLDLLRKKK VIGDKPVKRV VFNAITKKAV
121 LDAMAEPRDI DASLVDAYLA RRALDYLVGF NLSPVLWRKL PGARSAGRVQ SVALRLVCDR
181 EAEIERFVTE EYWNISALLK TPRGDEFEAR LVSADGKRLP PKAIGNGEEA NRLKSLLDGA
241 SYVVESVEAK PVKRNPSPPF TTSTLQQAAS SKLGFSASRT MQVAQKLYEG VDIGGETVGL
301 ITYMRTDGVQ MAPEAIEAAR QAIGSQFGER YLPEKPRFYS TKAKNAQEAH EAIRPTDFDR
361 TPDQVRRFLD GDMLRLYDLV WKRGIASQMA SAEIERTTAE IVADNAGKKA GLRATGSVIR
421 FDGFIAAYTD MKEDGEQADD GDEDGRLPEI NARENLAKQK INASQHFTEP PPRYSEATLI
481 KKMEELGIGR PSTYAATVTT LIDRDYVEID KRKLVPQAKG RLVTAFLESF FTRYVEYDFT
541 ASLEEKLDQI SAGELNWKDV LRDFWKDFFS QIEDTKELRV TNVLDALNEE LAPLVFPKRE
601 DGGDPRICQV CGTGKLSLKL GKYGAFVGCS NYPECNYTRQ LSSDSNGDAE AAAANEPQSL
661 GKDPHTGEEI TLRNGRFGPY VQRGDGKEAK RASLPKGWTP AAIDHEKALA LLSLPRDIGP
721 HPESGKMIST GIGRYGPFVL HNGTYANLES VEDVFSIGLN RAISVLADKQ SKGAGGGRAS
781 AAALKELGEH PDGGAITVRD GRFGPYVNWG KVNATLPRGK DPQSVTVEEA LALIAEREAK
841 GGVTKGKAAK GKPTGGKSAG TKSAKAASAG TAKAEKPKSA AKTKTKAAAK AKKD
//