LOCUS AEG52846.1 789 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 ribonuclease R protein.
ACCESSION CP002781-1071
PROTEIN_ID AEG52846.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1095"
/EC_number="3.1.13.1"
/inference="protein motif:TFAM:TIGR02063"
/note="SMART: Ribonuclease II/R; RNA-binding domain, S1;
TIGRFAM: Ribonuclease R, bacterial; Ribonuclease
II/ribonuclease R, bacteria; KEGG: smd:Smed_0931
ribonuclease R; PFAM: Ribonuclease II/R; Ribosomal protein
S1, RNA-binding domain"
/transl_table=11
/db_xref="GO:0003723"
/db_xref="GO:0004518"
/db_xref="GO:0004540"
/db_xref="InterPro:IPR001900"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004476"
/db_xref="InterPro:IPR011805"
/db_xref="InterPro:IPR022967"
BEGIN
1 MTRIPRDPTE TPAKGAGKKN GRAARTAPAG EKETIVHGVV PSREVLMRFI AENPQHASKR
61 EIAKAFGLKG EARVELKGLL RSLEEDGLVE KKRKSLVRPG GLPPVTVLDI TIRDVDGDLI
121 GRPAEWLDDD GVAPAVLIKQ SSVARAKGKT PVGGLGDRVL AKIFPAKERG GPAYTARIIK
181 VLDKRKDAVL GVFRATPGGG GRLMPIDKRG EELLIDPEFI GDAKEGDLVE AHLSRIGRYG
241 LPRAQVQNVI GSVASEKAIS MIAIHAHGIP HVFPERVLQE AEAARPATMA HREDWRTLPL
301 ITIDPADAKD HDDAVYAEPD SSPDNPGGVI VTVAIADVSW YVRARSALDL EALKRGNSVY
361 FPDRVVPMLP ERISNDLCSL KEGVDRPALA VRMRFSKEGR KAGHTFHRIM MRSAAKLSYQ
421 QAQTAIDGAP DDKTGPILDT ILKPLWEAYR TLTRGRERRQ PLELDVPERK IILKPDGTVD
481 RVFVPERLDA HKLIEEMMIQ ANVAAAETLE QKRQVLIYRV HDQPSLAKQE SLREFLATLD
541 IALAKGGNMR ANHFNGILAK ADGKPYETIV NQMVLRSQSQ AIYSPENIGH FGLNLLRYAH
601 FTSPIRRYAD LIVHRALVSA LGLGEGGIMP EEEAALDDIA AEISTFERRA MAAERDTIDR
661 LIAHHLNGRV GEEFDGRVSG VTKAGLFVTL PAYGADGFIP ISTLGRDYFI YDEAHQALSG
721 EKSGLGYRLG DPVQVKLVEA VPLAGALRFE MLSEGRKMPT AMRSFHKAGR RDRTGARKRP
781 GTRPPRGRH
//