LOCUS AEG52836.1 1169 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 DNA polymerase III, alpha
subunit protein.
ACCESSION CP002781-1061
PROTEIN_ID AEG52836.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1085"
/EC_number="2.7.7.7"
/inference="protein motif:TFAM:TIGR00594"
/note="SMART: Polymerase/histidinol phosphatase,
N-terminal; TIGRFAM: DNA polymerase III, alpha subunit;
KEGG: smd:Smed_0921 DNA polymerase III subunit alpha;
PFAM: Bacterial DNA polymerase III, alpha subunit; Nucleic
acid binding, OB-fold, tRNA/helicase-type; PHP,
C-terminal"
/transl_table=11
/db_xref="GO:0008408"
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004805"
/db_xref="InterPro:IPR011708"
BEGIN
1 MTGNQGIGQG IGHGTGAAAD PQFVHLRVHS AYSLLEGALP LKKIIGKAVA DDQPAIGIAD
61 TNNLFAALEF SQKAADDGLQ PIIGCQLSID MEDEAEGERR GHAHQFVKLP AIVLIAATED
121 GYARLVELVS RAYLEGEGHQ QTRISRSWLA AGGTTGLIAL TGAGAGPVDM ALKSGSPALA
181 EARLQALIEL FGDRLYVELQ RHGNYDRRHE NRMIDLAYRL DIPLVATNEA FFPSPSDYDA
241 HDALMAVAHN AMVSDDSRFR LTPDHYLKSR KEMAALFADL PEALENTIEV ARRCSFMLKT
301 RGPILPRFTG ASDDPEEAER AEVAELRRQA EEGLEERLAK LGMAPGYKEE DYRERLAFEL
361 GVIQRMKFPG YFLIVADFIK WAKQHDIPVG PGRGSGAGSL VAYALTITDV DPMRFSLLFE
421 RFLNPERVSM PDFDIDFCQD RREEVIRYVQ QKYGREQVAQ IITFGSLQAR AALRDVGRVL
481 EMPYGQVDKI CKLVPNNPAN PTPLSKAIEE EPRLQEEAEK EPVVARLLDI AQKIEGLYRH
541 ASTHAAGIVI GDRPLSQLVP MYRDPRSDMP VTQFNMKWVE QAGLVKFDFL GLKTLTVLKT
601 AVDFVGKRGI HIDLASIPLD DPKTYETLSR GETVGVFQVE SAGMRKALIG MRPDCIEDII
661 ALVALYRPGP MENIPVYNAR KHGEEEIESI HPKIDYLLKE TQGVIVYQEQ VMQIAQVLSG
721 YSLGEADLLR RAMGKKIKAE MDKQRARFVD GAVKNGVSKP QADLIFDLLA KFANYGFNKS
781 HAAAYAIVSY QTAYMKAHYP VEFLAASMTL DMSNTDKIND FRQDAMRLGI QVVAPSVQTS
841 HRHFETGDNR IYYSLAALKG VGESAVDHIV AVRGDRPFAS LEDFCLRIDP KLLNRRVFES
901 LIAAGAFDCF GYDRAELIGG LDRILGFAQR AQENKVSGQS DMFGAGAATG PEKIALSPYT
961 PWLASEKLHR EFQVLGFYLS AHPLDTYNNL LAKMRVQTFA DFSAAVKKGA AAGRLAGTVT
1021 SKQERKTRTG NKMGIVAFSD ASGQFEAVLF SEMLNQYRDL LEPGKSLVMT VDAEERPEGI
1081 GLRIRTLRSL EEESLQMQKA LRVYVRDCGP LRSIASHLNA KGDGLVSFIV IKDNGQREIE
1141 VELNEKYRIS PEIAAALRSA PGVVDVELV
//