LOCUS AEG52807.1 730 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 hypothetical protein protein.
ACCESSION CP002781-1032
PROTEIN_ID AEG52807.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1056"
/inference="similar to AA sequence:KEGG:Smed_0876"
/note="KEGG: smd:Smed_0876 hypothetical protein"
/transl_table=11
BEGIN
1 MKAFSITTAL AAALAASTAS VVQAEQVFNR IVSFAVATNL PEGAERNAPT SAEIITASED
61 GNTLIYSDSP GKRIGFIDIT DAKAPEAGGI VSFSGEPTSV AVAGAKALVA VNTSESFTKP
121 SGVLAVVDIA GRKVDATCDL GGQPDSVAVN KDRTLAAIAI ENERDEDVND GQIPQMPAGD
181 LVILSLKDGA ADCATIKHVT LTGLAEVAGD DPEPEFVAFN GRDEIALTLQ ENNHIVVIDG
241 KSATVKTHFP AGTVDLEAID TKRDGSIAFT GEQAGRKREP DAIKWLDDDR LVVANEGDYE
301 GGSRGFTIFD TTGKVLYESG AGFERAIASI GHYPEKRSSA KGVEPEGLEL AQFGEDKLFF
361 VLSERASIVG VYKDTGGEPE LVQLLPSGVS PEGAVAIPGR NLFATANEVD LVEDGGARSH
421 VMIYERGEGE AAYPQIRSVE KDGLPIGFGA LSGLAAADKP GFLHAVNDSV FSSQPTIFTI
481 DATQKPALIT EALPITRDGA PAQKLDIEGI ANDGEGGFWL ASEGNSDKLY SHALLHVNKK
541 GEIKQEIALP EELRANEIRY GFEGVAVVGE GDDQVLWMAV QREWKDDEKG FVKLVSYKPS
601 SKEWGAVRYP LEKSEEGWVG LSEISVHGDY AYIVERDNLI GEAAKLKKLY RVALADLKPA
661 ALGGELPVVN KEEVRDLIPD LQSLNGYVVD KVEGFAVDAA GNGYVVTDND GVDDSSGETL
721 FFSIGAMDAM
//