LOCUS AEG52611.1 1427 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 outer membrane autotransporter
barrel domain protein protein.
ACCESSION CP002781-836
PROTEIN_ID AEG52611.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0856"
/inference="protein motif:TFAM:TIGR01414"
/note="TIGRFAM: Outer membrane autotransporter barrel;
PFAM: Autotransporter beta-domain; KEGG: oan:Oant_4504
outer membrane autotransporter; SMART: Autotransporter
beta-domain"
/transl_table=11
/db_xref="InterPro:IPR005546"
/db_xref="InterPro:IPR006315"
BEGIN
1 MSDSCTSRGA RAALRKRKTL SLRTRLRQEA SSTALYASWG TGSKTFVIPA GPVLASVGFT
61 LAIGAGAVSP AHAINECGPA IGGVVTCNTS TYPKGPGTHI EYRIDTGLRA TIDSVAVRWA
121 DDAGSDRPAI DIRSDKVTSE GDLIVTIEGS TVTTGEPDRI GTRSDREVGE YADGLRVTQR
181 GAGLVSATML SGSIITYGYN AAGIYAWQPG ANENNKSDVI ADFSGEDSTI ETFGSYSQGI
241 YGRTETGIGN VAVTAKDGTI VTHGLSSIGV RGLKHSASLG DGDVTVAGDN ITVTTGGNLS
301 IGMEARVEDS KSGRGNASVF VRNEAAIETS GTRAHGAQAF NLDPGDSTVV LEKSKITTRG
361 EGAIGIRAEA GDGNAVTEVT KGSIATAGAS AIGLAAISQG NMGEARVSLD GGDVSTGGDN
421 AEGLIATAKG AGGTATARLV DGNVKTAGRD AEGLIAHAGD ESIPTSINAD ASVIMQAGSI
481 TTTGDGAGGM IAETDIGPTP STGKATAVQR AGTIMTSGGE IGGNEGSYAI AALSFGSGLA
541 SIEQAGGSAT TAGAQSHALY ALSIFGNTMV TQAAGSSAVA TGAKASGLRA LAGPGGGNEV
601 TLDGKVTAGS APAVHTIGSA GSKITIGSAA EIDGSASGTA IRDGDSDLDA ADETGGNSTA
661 TLAGKVTGDV VMGLGNDIIN LTGGVLDGDV YGDDRLATAA DGDDSFTWSG GTWLSSFFGG
721 NGSDTATVSA QSYDGTHHYL DGGDDVSTAD GWTDRLNLSG VTASANGANI VNWEIVTLDA
781 ADVTILDGAL EAGSEPETGL FLTNGSVLNG SDAFALAGNM AIDGTSQFIA FGEDIANGVY
841 SISGNLVNAG TVDMQDGGTG DVLSVGGNYT GAENSTVYID TYLGDDASPT DHITVGGDTA
901 GSTAISIGNA GGPSAQTVAG IRVVGVAGAS SGTFVLANAN SEIKETGEAA ITRGAYAYAL
961 RQVDNDDWFL QSTLAEDDTG PDTGGEQAVD PETEGGETVD PGTGGGETVD PGTGGGETVD
1021 PGTGGGETVD PGTGGGETVD PGTGGGETVD PETGGGETVD PGTGGGETVD PGTGGGETVD
1081 PGTGGGETVI PSYNQGVPVY ETYARNLLGF IQLPTLRRRA SGERVPALRS CGSVPLNVEG
1141 NQTAACAEDN TVWARIDGTR AHVEPEESGA RVSEYDSRSW LLQAGIDALL HSSGKGELIG
1201 GLTAHYGGIN TDVSSFYGDG SIDTRGYGLG ATLTWYGQNG FYLDGQGQLT RFDSDLDSDI
1261 LGRLADGNDG LGYAVSIEAG HRIGLGDTWA LTPQAQLVNT SVNFDDFVDP YGARVSLDDG
1321 NSLRGRIGLA LDREQQWQGA EGDGRSSRLY GTIDLCREFL GDTRADVSGV SFGIEADDWI
1381 GEIGIGGSYN WGDDKYSLYG EARASTGLSD FGGSYAVRAS VGLKMKF
//