LOCUS AEG52400.1 1153 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 chromosome segregation protein
SMC protein.
ACCESSION CP002781-625
PROTEIN_ID AEG52400.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0640"
/inference="protein motif:TFAM:TIGR02168"
/note="TIGRFAM: Chromosome segregation protein SMC; PFAM:
RecF/RecN/SMC; SMCs flexible hinge; KEGG: smd:Smed_0547
chromosome segregation protein SMC; SMART: SMCs flexible
hinge"
/transl_table=11
/db_xref="GO:0005515"
/db_xref="GO:0005524"
/db_xref="InterPro:IPR003395"
/db_xref="InterPro:IPR010935"
/db_xref="InterPro:IPR011890"
BEGIN
1 MKFTRLRLLG FKSFVEPTEF VIERGLTGVV GPNGCGKSNL VEALRWVMGE NSYKNMRASG
61 MDDVIFSGSG NRPARNTAEV GLYLDNSDRT APAAFNDSDE IQVTRRIERE QGSVYRINGK
121 EARAKDVQLL FADASTGARS PSMVGQGRIG ELIAAKPQAR RQLLEEAAGI SGLHSRRHEA
181 ELRLKAAETN LERLDDVTSQ LESQIESLKR QARQANRFKM LSAEIRRHEA ILFHTRWVQA
241 KEAEAEATSH LNQITALVAE KAQAQMEAAK AQAVASLKLP ELRENEAKFA AGLQRLQIAR
301 AQLEEDAGRI LRRREELQRR LAQLAEDIAR EERLVADNAG ILARLDQEEE ELRDVLAEAD
361 DRGAQARERL DEANEKLAAS EAGLARITAE RAEAQAARNQ IERALRDLSE RQARLARQLA
421 DQGRELDDLD GQMARLPDPD EKREQVELAE AALEEAEAAV AAVEESLAEA RADEAAARLP
481 VDQARARLNG IETEARTIRR MLEAAGGSTY PAVVEEMKVE RGFEAALGAA LGDDLDSPLE
541 QAAPTHWRMP GDDAEDPALP AGALPLIDFV QAPEALRRAL RQIGIVESDG EAERLLPLLR
601 AGQRLVTRQG AVWRWDGHVT GSEAPSAAGL RLAQKNRLSE LEGEAEEASD ASLKAEAHLA
661 AAGARIRAED ERLRLSREAQ RMLARQLSEA RDALAVAERA SGDLARRRAV LAETKLQIEG
721 QAEEIAEEIE AAKEASAGQP DLAELDLRLS RRTAEVATDR AAAAEARAAH DGLARENDGR
781 LRRLAAIAGE RETWAARAAS AEDHIATLRE REAEAREEVE ELLDAPDEFD DKRRALMNEL
841 QKAEASRREA ADRLAEAENH QREADRQAAT ALSELAEVRE KRGRAEERLV SARERRVEIE
901 ARILEALSCA PHEVMRLTGL GSDEGLPDMR GVERELERLK IERERLGAVN LRADEEQKEL
961 SERLAALLKE RDDVIEAIRR LRSAIQNLNR EGRERLIAAF DVVNVQFQRL FTHLFGGGTA
1021 ELQLIESDDP LEAGLEILAR PPGKKPQTMT LLSGGEQALT AMALIFAVFL TNPAPICVLD
1081 EVDAPLDDHN VERYCNLMDE MAASTETRFV IITHNPITMA RMNRLFGVTM AEQGVSQLVS
1141 VDLQTAERLR EAV
//