LOCUS AEG52291.1 574 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 Dihydroxy-acid dehydratase protein.
ACCESSION CP002781-516
PROTEIN_ID AEG52291.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0529"
/EC_number="4.2.1.9"
/inference="protein motif:PRIAM:4.2.1.9"
/note="KEGG: rhi:NGR_c04330 dihydroxy-acid dehydratase;
PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase"
/transl_table=11
/db_xref="InterPro:IPR000581"
BEGIN
1 MSDKKKELRS RHWYGGTHKD GFIHRSWMKN QGFPDHVFDG RPIIGICNTW SELTPCNSHL
61 RILAEGVKRG VWEAGGFPVE FPVSSLGETQ MRPTAMLFRN LLAMDVEEAI RAYGIDGVVL
121 LGGCDKTTPG QLMGAASVDL PTIVVSSGPM LNGKWKGKDI GSGTDVWKFS EAVRAGEMSL
181 QEFMAAESGM SRSPGVCMTM GTATTMASIV EAMGLSLPTN AALPAVDARR MALSHMTGKR
241 IVEMVHEDLR LSKILTKENF ENGIIANAAV GGSTNAVVHM LAIAGRAGID LCLEDFDRVG
301 GQVPCIVNCM PSGKYLIEDL AYAGGLPAVM NRIQHLLHPD APTVFGVPIS KYWEAAEVYN
361 DDVIRPLDNP LRAAAGIRVL KGNLAPNGAV IKPSAASEHL LAHEGPAYVF DTIEDLRAKI
421 DDPDLPVTED TILVLKGCGP KGYPGMAEVG NMPIPRRLVE KGVRDMVRIS DARMSGTAFG
481 TVVLHVSPEA NAGGPLAIVR TGDRIRLDAL KGELNLLVSE EELAARMAAW QPPEQKWHRG
541 YYKLYHDTVL QADKGADLDF LVGKSGSEVL RESH
//