LOCUS AEG52187.1 1133 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 PAS/PAC sensor signal transduction
histidine kinase protein.
ACCESSION CP002781-412
PROTEIN_ID AEG52187.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0424"
/inference="protein motif:TFAM:TIGR00229"
/note="TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding
domain; PAS fold; Signal transduction histidine kinase,
subgroup 1, dimerisation/phosphoacceptor domain; KEGG:
smd:Smed_0318 PAS/PAC sensor signal transduction histidine
kinase; SMART: ATPase-like, ATP-binding domain; Signal
transduction histidine kinase, subgroup 1,
dimerisation/phosphoacceptor domain; PAS"
/transl_table=11
/db_xref="GO:0004871"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR013767"
BEGIN
1 MPERQYPFID IAVHARVREH FARGDASVLF SKNVARVLWA NDQGAKLFGT TSVYDFIDTD
61 LDPSDLSLRQ LRAAAAQLAA VGDRRQLLIR MASGFRRLPL NAAVELIRIG PGEEAILFTV
121 PNNGKALSTE ARAEAMIAGL DGPDTHMAVL DADGTVIAGS PGFESLGLSA DIRRTLVAAA
181 ASDKDRLIKR PVATEKGRLP AAVGKISDHP ALHLLFAVEA ILEKSETGEA VGAAAAEQAI
241 PAAPAAPAET REAVPSSAAP AETEQPAGRL EEAEPAPSPE AAAPAEHEAS VGDGTDDEAP
301 GELAPQDEAE AADLAEPETP LEAEPASGEP AADADRGGET ADFAFAAGGR AVRFVWKIDA
361 EGRFSEISEE FASAVGPKAA DVIGVSFTDL ADRYDLDPDD KINELLHRRD TWSGKTIFWP
421 VQGTNLKVPV DLAALPTYSR SREFDGFRGF GIVRIADAVP DAKAAGLALD RPAPAQTAQA
481 SSDMSSEGAG APQAEAGSKT GPAGSGKDAA EAAPDVSEDP FRGEQPALRV VETAGRQASD
541 KVIDLDERRP AGAGALTRGE QAAFREIARQ LGEHFAPDQL PQEGKAEGRH EADTSPSTPA
601 DTEESRQTEK AEAPGGWHDA TPAGETPAAA MEPGLTARNG AAMSSEILDR LPVALLVHHG
661 DALLHANAEF LRLTGYENLE AFEQEGGLEA LFALGNEAGA AKPNGTMTLV RKDGRLIPVG
721 AHLHSIRWEG KSALMLALTP AGASEAEKQA REDEGAAEAS RLRMEIDELR SILETATDGV
781 VVLGRDGDIR TMNRSASALF DYDESDMRGK PFAALFAHES QKAVIDYLQG LSGHGVASVL
841 NDGREVIGRE AAGGFIPLFM TIGRLSSSNG YCAVIRDITQ WKRTEEELRN AKRAAETANA
901 HKTEFLARVS HEIRTPLNAI IGFSDMMASE HFGPIGHPRY IEYAGDIGRS GRHVLDIVND
961 LLDISKIEAG EMDLDFGAVD LNEAVSEAVS LVQPQANSQR VIIRTSLSGS VPEVVADDRS
1021 IKQIALNILA NAIRFTPSGG QIVVSTSYEA NGSVILRIRD TGIGMTRNEL DQAMKPFRQV
1081 TTGGRKRGDG TGLGLPLTKA MAEANRAQFA ITSAPNEGTL VEISFPSQRV LAN
//