LOCUS AEG51950.1 1220 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 Peptidoglycan-binding domain
1 protein protein.
ACCESSION CP002781-175
PROTEIN_ID AEG51950.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0179"
/inference="protein motif:PFAM:PF01471"
/note="KEGG: smd:Smed_0147 peptidoglycan binding
domain-containing protein; PFAM: Peptidoglycan
binding-like; Sel1-like; SMART: Sel1-like"
/transl_table=11
/db_xref="InterPro:IPR002477"
/db_xref="InterPro:IPR006597"
BEGIN
1 MNGSRSTSQR MGSPSYGDRP SLDALNRTIE GLEARIEGLM SSVSRETRQP ERPRPAPSEA
61 VSEIIDRQRA LNAARERSPL RERAAPSESD RLAPTRLAAE TRYQPPQAAA APSGRSSAAA
121 DIAEALVGLR HELKRDLDDG LSREMHALRS EIRGIKAEAA QDRRFAEDVR HDIERLSAGI
181 KELGRQASPA EADALRIEFD DLRSMLEGLA REDSMRRMEN RWTGVEDRLN AFDQNRDDEL
241 VALAYRLDEI KAQINSLDRG AGVEVLESKL VAVAQAIEML GRQIQPDERR LAPQFADLDR
301 RLDEISRAIA AGSRNVAGTD GSFVDRLENR LGDLSRQIDT LSNPVDSGLG ARIEALAARV
361 EDLAGEKAAA RLEERLDQLS AVLKHNRPGA EPDLTDRLAD ISRKIEALSG DSITDALAER
421 LDDLARRIDG LAGNVEPSAD TRFDRLEDRL AGIAQRLEET HAAPFDDRQA LRNLEAQIGN
481 LSTLISQSHG ETAGVPAEFE SRMNTLEDYL ATSDEYIIEA ARQAAEAVME AYSRNTAPQM
541 AASTDMAAIS ALAEDLRTLE ELSRSSDERT ARTFEALHET LVHIAEKLER LEEREPPASH
601 APMPKAAPLE AAGTLTKAER DEDVERAAHA LAAESETSIH APVAAAAEAN DAAEVAMVED
661 GEIKVEARAA KTGLLAGLTR RFAPKQNEGM PIQARQMVEP APSIDPSEML APEDANQLLE
721 PGSGVPDVKK ILERVRAGQI ARGAQEANEG EKADFIAAAR RAAQLAVEES DTLNRVKESK
781 APSAVGGALA RHRRPILIAV GAVLLAIMSY PLVSTVLKGK EAPSAPPVAA IERRAEVAEP
841 KAAVDRVVQT AATAKIGEEP RAPAGAEKTD APAIAAKQPP TQPAAAEAGK IDEAIGGAGD
901 GQAALMRPAE AQTPGPISTL QPSSESSAAE PAKMSEIVLP EGFGPPALVT AAKGGDPLAF
961 YEIGARFTEG RGVGEDRAEA VKWYQRAADA GVVPAEYRLA NLYEKGAGVQ RDAAKAKALY
1021 LKAAAAGNAS AIHNLAVMLA GGRDGAPDLA EAAKWFEKAA NLGVRDSQFN LAVLYARGDG
1081 LARNLEDSYK WFAIAARDGD KDAAEKRDEI AKALKPEELS SAKAKVDAWK AQPLDAEANT
1141 VEVPDAWVGP PTKTATVDMT RAVRNIQAIL NNNGFDAGKP DGQVGQKTTA AIKAFQKSVG
1201 QEPTGEITDG LVRELLKRNS
//