LOCUS AEG51947.1 737 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 3-hydroxybutyryl-CoA epimerase protein.
ACCESSION CP002781-172
PROTEIN_ID AEG51947.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0176"
/EC_number="5.1.2.3"
/inference="protein motif:PRIAM:5.1.2.3"
/note="KEGG: smd:Smed_0144 3-hydroxyacyl-CoA dehydrogenase
NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD
binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal;
Crotonase, core"
/transl_table=11
/db_xref="InterPro:IPR001753"
/db_xref="InterPro:IPR006108"
/db_xref="InterPro:IPR006176"
BEGIN
1 MSYTNFKIET DADGIALVTW DMPDKSMNVF TEEVMKELDA IIDQTTADPA VKGVVITSGK
61 SSFSGGADLS MIKSMFTFQD EEKKKDPDNA ARKLFDLVGR MTGLFRKLET SGKPWVSAIN
121 GTCMGGAFEM SLACHGRVAS NAKSVKIALP EVKVGIFPGA GGTQRVPRLT NTQDALQMMT
181 TGSSLTPARA KAMGLVHEVV DRDKLIEAAK AMIKNGLKPV QPWDEKGFKL PGGGIWTPAS
241 AQLWPAASGI LRRETYGNYP GAIAILKCVY EGLQVPFDTA LKIEQRYFTE ILQTTEAFSM
301 IRSLFVSMQE LGKGARRPAG VPKTELKKVG VVGAGFMGAS IAYVTAAGGI PVTLIDRDME
361 AAEKGKTHSE GLVKDAIGKG RLTKEEGEAL LSRITPSADY GDLRDAGLVI EAVFEDRQVK
421 KDVIEKVEAV IAEDAIFASN TSTLPITGLA RNSKRPDRFI GIHFFSPVEK MMLTEVILGK
481 ETGDRALAAA LDYVAAIRKT PIVVNDTRGF YVNRCVFRYI HEAYDMLIEG VPPAMIENAA
541 KMAGMPVGPL SLNDEVAIDL SQKILKAAVA DLGDKAVDPR HMALIDKMVD ELDRRGRKNG
601 KGFYEYPAKP ARKYLWPGLK ELYPQKDAGE IEVGVLKQRL LVTIALEAAR TIEEGIVTDP
661 READVGSILG FGFAPYTGGT LSYIDGMGAK AFVELCEKLA ADHGDHFRPT PLLKEMAEKG
721 ETFYGRFDPY GAGQKAA
//