LOCUS AEG51924.1 420 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 PAS/PAC sensor signal transduction
histidine kinase protein.
ACCESSION CP002781-149
PROTEIN_ID AEG51924.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0153"
/inference="protein motif:TFAM:TIGR02966"
/note="TIGRFAM: Signal transduction histidine kinase,
phosphate regulon sensor PhoR; PFAM: ATPase-like,
ATP-binding domain; Signal transduction histidine kinase,
subgroup 1, dimerisation/phosphoacceptor domain; PAS
fold-4; KEGG: smd:Smed_0118 PAS/PAC sensor signal
transduction histidine kinase; SMART: ATPase-like,
ATP-binding domain; Signal transduction histidine kinase,
subgroup 1, dimerisation/phosphoacceptor domain"
/transl_table=11
/db_xref="GO:0000155"
/db_xref="GO:0004673"
/db_xref="GO:0005515"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR013656"
/db_xref="InterPro:IPR014310"
BEGIN
1 MRNEDIVLDG AKVFWRTLLP RLKAERGLLG LSVVLAFLAA LAGIHPLAVL PFWIVLVAAI
61 LNRGAPPVQT APASVGAAVE TKADPLAPLL DALDMPVLVV AADETVVFQN AAAEKAFGTI
121 PQDSYLSARV RSPGILDMVR ETIATGKVNQ IEHAERLPSE AVYVVRVAPV DIGSDVSGRR
181 IFLLTYRDIS QARRIDRMRS DFVANASHEL RTPLASLRGF IETLQGPARD DRKAQEKFFG
241 IMHEQVTRMS RLVDDLLSLS RLELKSHIAP DDAVDLGPLL GHVRDSLAPL AGELDVTIAL
301 EVPETPVFVQ GDRDELVEVF ENLIENACKY GQEGKQVDVR LTGGNGHQAE VTVTDHGPGI
361 PAEHVPRITE RFYRVNVEAS RSKKGTGLGL AIVKHILTRH RARLLIHSEV GKGTVFKVRF
//