LOCUS AEG51917.1 1018 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 SMC domain protein protein.
ACCESSION CP002781-142
PROTEIN_ID AEG51917.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0145"
/inference="protein motif:PFAM:PF02463"
/note="PFAM: RecF/RecN/SMC; KEGG: rhi:NGR_c01380
hypothetical protein"
/transl_table=11
/db_xref="GO:0005524"
/db_xref="InterPro:IPR003395"
BEGIN
1 MSEIFLRSVE FSNFRVYGDS YVFKLPAEPG VTLITGANGL GKTSFFDGVE WALTGQVSRF
61 SDIRTDNRRR EADPLTRVGA PENSHRVALA FTAGDPIDRG CGFLPTEEEV AALLKQERWP
121 AISNLHGYLS ITHFLGQAST RRFSLREPRA QWEALKGPAG VDRINSLRER VSGQGARQAF
181 TRAIRDRTLR LEKASEALRS WRSLIEDRDR LAVLSNSERS LSPQQVLEES ERITAQLAAL
241 LPNAQLEMVG RADEPEGALK RLSDLIGEVG EYNRAEEAKS KALGAIVAAY ERSLAETAAK
301 SALVKEIGAR RIQLVDDLAK AEAALNQAST AHGRSRQLAQ QLMARSATLI RVEAAVAQLH
361 KASAAIAEAD QQLRASKGEE DKAQRRREDV QSQIDNAKTL RAERSRASAQ LSQAQKRVQI
421 STALSQTRLE IARLIRLISA RDAEHLSARK SEILNAQSAT KAEIDGLNTE LRKHDERGRL
481 LAEAIASIAH QLSHEDESCP ICDTRFTPGR LKALADAHSR AGATPASALA ANLALARSRQ
541 DELLRRQSEL DRALTELGQL NASLVTQQDH ETRLLQALVE AGGAVDVHYD ESGVVAARMA
601 LASLDEHIVN GPTEEGLESL LAEAQATMDA ERARQGNLDR QRVNAIADAE AARSTLGQHA
661 DLWAPDRGLI ISLDEQLAST RAESALIGEK VQDDQTKVDA ARLGRDAITD AIANEDASLS
721 TTNRELDREA ELRRDLLRQW NDAGQTGDPD SARVAQISSR ISERVVRIEP IAFAHAELIN
781 GLRIWQDDQR LQERERSIAA TLANFDLSTI PEVTARFIRD IADIQEELDL AQKARARMED
841 VGQGMQQRAE EFADDVLKPL NETIQRFALP LMTWTDASII YRAEHHATRS ELKPAIVRAG
901 PDGKVAQLEM NPNLYFSEGQ LSALSVSALL AASTTFSWSK WRGLLLDDPL QHNDVIHSSA
961 FMDLIRQMVR ELRYQVILST HDSTEAEFLV RKCKSAGIPF AIHELVPRGD AGLISEVA
//