LOCUS AEG51877.1 1233 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 delta-1-pyrroline-5-carboxylate
dehydrogenase protein.
ACCESSION CP002781-102
PROTEIN_ID AEG51877.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0104"
/EC_number="1.2.1.88"
/EC_number="1.5.5.2"
/inference="protein motif:TFAM:TIGR01238"
/note="TIGRFAM: Delta-1-pyrroline-5-carboxylate
dehydrogenase 3; KEGG: smd:Smed_0092 bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase; PFAM:
Proline dehydrogenase; Aldehyde dehydrogenase domain"
/transl_table=11
/db_xref="GO:0003842"
/db_xref="InterPro:IPR002872"
/db_xref="InterPro:IPR005933"
/db_xref="InterPro:IPR015590"
BEGIN
1 MSPNPLQKPA IDAAPAPFAD FAPPVRPQST LRRAITAAYR RPETECLPPL VEAATQSKEI
61 RDAAASTARK LIEALRGKHS GSGVEGLVQE YSLSSQEGVA LMCLAEALLR IPDTATRDAL
121 IRDKIADGNW KSHLGGSRSL FVNAATWGLV VTGKLTSTVN DRSLAAALTR LISRCGEPVI
181 RRGVDMAMRM MGEQFVTGET IREALKRSKE LEEKGFSYSY DMLGEAATTA ADAERYYKDY
241 ESAIHAIGKA SAGRGIYEGP GISIKLSALH PRYSRAQAAR VMGELLPKVK ALALLAKNYD
301 IGLNIDAEEA DRLELSLDLL EELCLDGDLS GWNGMGFVVQ AYGKRCPFVL DFIIDLARRS
361 GRRIMVRLVK GAYWDAEIKR AQLDGLADFP VFTRKIHTDV SYIACAAKLL AATDVVFPQF
421 ATHNAQTLAA IYHMAGKDFH VGKYEFQCLH GMGEPLYEEV VGRGKLDRPC RIYAPVGTHE
481 TLLAYLVRRL LENGANSSFV HRINDPKVSV DELIADPVEV VRAMPVVGAK HDRIALPAEL
541 FGDARTNSAG LDLSNEETLA SLTEALRESA AMKWTALPQL ATGPAAGETR TVLNPGDHRD
601 VVGSVTETSE EDARRAVRLA AEAAPDWAAV PPSERAACLD RAAELMQARM PTLLGLIIRE
661 AGKSALNAIA EVREAIDFLR YYAEQTRRTL GPGHGPLGPI VCISPWNFPL AIFTGQIAAA
721 LVAGNPVLAK PAEETPLIAA EGVRILHEAG IPASALQLLP GDGRVGAALV AAAETAGVMF
781 TGSTEVARLI QAQLADRLSP AGRPIPLIAE TGGQNAMIVD SSALAEQVVG DVITSAFDSA
841 GQRCSALRVL CLQEDVADRI LTMLKGALHE LHIGRTDRLS VDVGPVITSE AKDNIEKHIE
901 RMRGLGRKVE QIGLASETGA GTFVPPTIIE LEKLSDLQRE VFGPVLHVIR YRRDDLDRLV
961 DDVNATGYGL TFGLHTRLDE TIAHVTSRIK AGNLYINRNI IGAVVGVQPF GGRGLSGTGP
1021 KAGGPLYLGR LVTTAPVPPQ HSSVHTDPVL LDFAKWLDGK GARAEAEAAR NAGSSSALGL
1081 DLELPGPVGE RNLYTLHARG RILLVPATES GLYHQLAAAL ATGNSVAIDA ASGLQASLKN
1141 LPQTVGLRVS WSKDWAADGP FAGALVEGDA ERIRAVNKAI AALPGPLLLV QAASSGEIAR
1201 NPDAYCLNWL VEEVSASINT AAAGGNASLM AIG
//