LOCUS AEG51832.1 1061 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 transporter, hydrophobe/amphiphile
efflux-1 (HAE1) family protein.
ACCESSION CP002781-57
PROTEIN_ID AEG51832.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0057"
/inference="protein motif:TFAM:TIGR00915"
/note="KEGG: smd:Smed_0062 hydrophobe/amphiphile efflux-1
(HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile
efflux-1 HAE1; PFAM: Acriflavin resistance protein"
/transl_table=11
/db_xref="GO:0005215"
/db_xref="InterPro:IPR001036"
/db_xref="InterPro:IPR004764"
BEGIN
1 MNFSRFFVDR PVFAGVLSVI IFVAGLIGMT GLPISEYPEV VPPQIVVRAQ YPGANPAVIA
61 ETVATPLEEQ INGVEGMLYM QSQATADGLM TLTVTFELGT DPDQAQQLVQ NRVSQAEPRL
121 PEEVRRLGVT TVKSSPDLTL VVHLISPNGQ YDINYLRNYG VLNVKDRLAR VDGVGQVQIF
181 GGGDYSMRVW IDPEKAAERG LAASDIANAV RGQNVQAAAG VIGASPSVPG LDLQLSVNAQ
241 GRLKTPEDFA DIVVKSGESG EITRLGDVAR VEMGAADYSL RSLLDNKAAV GMGVFQAPGS
301 NAIQISENVH KVMAELKQTM PDGVDYEIVY DTTQFVRASI ESVIHTLLEA IALVVVVVIV
361 FLQTWRASII PLVAVPVSIV GTFAVMYVFG FSINALSLFG LVLAIGIVVD DAIVVVENVE
421 RNISQGLSPV QATYRAMQEV SGPIIAIALV LVAVFVPLAF ITGLTGQFYR QFALTIAIST
481 VISALNSLTL SPALAALLLK DHHAPKDRLT RVMDGLFGWF FRGFNRFFGA SSEAYGRGVG
541 GILTRKSLVM GVYVVLLGVT FVLFRAVPGG FVPAQDKQYL IGFAQLPDAA TLDRSEDVIR
601 RMSEIALKHP GVEHAIAFPG LSINGFTNSS NSGIVFVSLK PFEERTTPEL SGGAIAMQLN
661 QEFGAIQDAF IAMFPPPPVQ GLGTTGGFKL QIEDRNGLGY RTLDDATKAV LAKAMAAPEL
721 AGLYSSFQIN VPQLYADLDR TKARQLGVAV TDVFETLQIY LGSLYVNDFN AFGRTYSVRI
781 QADASYRSHA DDIGKLKVRS QTGEMIPLSA LLNVEQTVGA ERAIRYNGFL AADINGGPAP
841 GFSSGQAQAA IERIAAETLP PGISYEWTDL TYQQILAGNS GILVFPLALL LVYLVLAAQY
901 ESLLLPIAII LIVPMGIMAA LTGVWLTGGD NNVFTQIGLI VLVGLSAKNA ILIVEFAREL
961 ELSGSNAVSA AIEASRLRLR PILMTSMAFI MGVVPLVTST GAGAEMRSAM GVAVFAGMIG
1021 VTAFGIFMTP VFYVLIRKLS GEKPLKHTGA HIEAPHLAPG E
//