LOCUS AEE87046.1 92 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana cold, circadian rhythm, and RNA binding
1 protein.
ACCESSION CP002687-7269
PROTEIN_ID AEE87046.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="CCR1"
/locus_tag="AT4G39260"
/gene_synonym="and RNA binding 1"
/gene_synonym="ATGRP8"
/gene_synonym="circadian rhythm"
/gene_synonym="cold"
/gene_synonym="GLYCINE-RICH PROTEIN 8"
/gene_synonym="glycine-rich RNA-binding protein 8"
/gene_synonym="GR-RBP8"
/gene_synonym="GRP8"
/gene_synonym="T22F8.160"
/gene_synonym="T22F8_160"
/inference="Similar to RNA sequence,
EST:INSD:DR347670.1,INSD:DR184893.1,INSD:DR281943.1,
INSD:DR360686.1,INSD:DR184948.1,INSD:EL064560.1,
INSD:ES026768.1,INSD:ES192467.1,INSD:EH929231.1,
INSD:DR281945.1,INSD:EL247004.1,INSD:EL045834.1,
INSD:ES099268.1,INSD:ES150724.1,INSD:AA720194.1,
INSD:U74119.1,INSD:EL253325.1,INSD:ES023886.1,
INSD:EL044980.1,INSD:ES151072.1,INSD:DR281947.1,
INSD:CB261625.1,INSD:DR347688.1,INSD:DR281884.1,
INSD:ES198255.1,INSD:EL034059.1,INSD:EL093508.1,
INSD:DR281886.1,INSD:DR281895.1,INSD:ES045350.1,
INSD:EG516396.1,INSD:EH876768.1,INSD:ES042405.1,
INSD:EL998365.1,INSD:DR281890.1,INSD:DR281891.1,
INSD:EG502396.1,INSD:DR281888.1,INSD:EL330471.1,
INSD:DR201628.1,INSD:EH823942.1,INSD:DR347721.1,
INSD:ES058903.1,INSD:AV566394.1,INSD:BE844985.1,
INSD:T46354.1,INSD:ES207870.1,INSD:ES065460.1,
INSD:EH818786.1,INSD:EH916681.1,INSD:DR281944.1,
INSD:DR281919.1,INSD:BE529654.1,INSD:DR281950.1,
INSD:ES071469.1,INSD:DR185120.1,INSD:EL232729.1,
INSD:DR347731.1,INSD:AV544383.1,INSD:DR281893.1,
INSD:DR281914.1,INSD:DR281927.1,INSD:DR281887.1,
INSD:EH920499.1,INSD:EG502395.1,INSD:EG498680.1,
INSD:ES106415.1,INSD:DR347739.1,INSD:DR281931.1,
INSD:DR185037.1,INSD:DR184998.1,INSD:EG516398.1,
INSD:ES171635.1,INSD:ES055851.1,INSD:EL259990.1,
INSD:EH903410.1,INSD:DR281901.1,INSD:DR185023.1,
INSD:ES088543.1,INSD:ES105655.1,INSD:EL298107.1,
INSD:DR281951.1,INSD:DR347691.1,INSD:EG522351.1,
INSD:DR281958.1,INSD:ES019227.1,INSD:ES037471.1,
INSD:DR184939.1,INSD:DR281903.1,INSD:ES054390.1,
INSD:EH914494.1,INSD:EH816522.1,INSD:ES036036.1"
/note="cold, circadian rhythm, and RNA binding 1 (CCR1);
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: response to zinc ion, response
to salt stress, response to cold, circadian rhythm, innate
immune response; LOCATED IN: nucleolus, cell wall,
peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27
plant structures; EXPRESSED DURING: 16 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine
rich protein (InterPro:IPR015465), RNA recognition motif,
RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta
plait (InterPro:IPR012677); BEST Arabidopsis thaliana
protein match is: cold, circadian rhythm, and rna binding
2 (TAIR:AT2G21660.2); Has 82664 Blast hits to 34440
proteins in 1574 species: Archae - 59; Bacteria - 22063;
Metazoa - 30672; Fungi - 6267; Plants - 13203; Viruses -
1104; Other Eukaryotes - 9296 (source: NCBI BLink)."
/db_xref="TAIR:AT4G39260"
/db_xref="Araport:AT4G39260"
intron_pos 37:0 (1/2)
intron_pos 87:1 (2/2)
BEGIN
1 MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM
61 RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
//