LOCUS AEE87017.1 228 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana PHD finger family protein / bromo-
adjacent homology (BAH) domain-containing protein protein.
ACCESSION CP002687-7234
PROTEIN_ID AEE87017.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="SHL1"
/locus_tag="AT4G39100"
/gene_synonym="short life"
/gene_synonym="T22F8.2"
/inference="Similar to RNA sequence,
EST:INSD:EH865704.1,INSD:EH897999.1,INSD:ES097725.1,
INSD:EL108257.1,INSD:ES159316.1,INSD:AV567113.1,
INSD:BP635195.1,INSD:BP860207.1,INSD:EL215620.1,
INSD:EL046704.1,INSD:ES087885.1,INSD:AV820317.1,
INSD:DR371351.1,INSD:EL210741.1,INSD:EL206964.1,
INSD:BE520773.1,INSD:DR221320.1,INSD:DR221321.1,
INSD:BP811535.1,INSD:ES036554.1,INSD:EL125963.1,
INSD:DR221316.1,INSD:BP626303.1,INSD:H37624.1,
INSD:BP613650.1,INSD:EL994298.1,INSD:DR221315.1,
INSD:EH983268.1,INSD:EH989071.1,INSD:EH946580.1,
INSD:AV819110.1,INSD:BP627688.1,INSD:EL265917.1,
INSD:EL167307.1,INSD:EL035350.1,INSD:EH828867.1,
INSD:EH967057.1,INSD:BP629650.1,INSD:ES171917.1,
INSD:ES153092.1,INSD:AV826489.1,INSD:EL178977.1,
INSD:BP603811.1,INSD:EH917071.1,INSD:DR221318.1,
INSD:EL199394.1,INSD:EL317202.1,INSD:EH924544.1,
INSD:EH930011.1,INSD:EL039383.1,INSD:BE520774.1,
INSD:DR221319.1,INSD:AV787941.1,INSD:EH976085.1,
INSD:BP823483.1,INSD:EL015058.1,INSD:BP654358.1,
INSD:EL299906.1,INSD:EL153393.1,INSD:AV555144.1,
INSD:EL102148.1,INSD:H37427.1,INSD:DR221317.1,
INSD:EH896974.1,INSD:AW004299.1,INSD:EL191125.1,
INSD:AV820945.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AF277453.1,INSD:AY088603.1,INSD:AY050934.1,
INSD:AY079396.1"
/note="short life (SHL1); CONTAINS InterPro DOMAIN/s: Zinc
finger, PHD-type, conserved site (InterPro:IPR019786),
Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent
homology (BAH) domain (InterPro:IPR001025), Zinc finger,
FYVE/PHD-type (InterPro:IPR011011), Zinc finger,
PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana
protein match is: PHD finger family protein /
bromo-adjacent homology (BAH) domain-containing protein
(TAIR:AT4G22140.2); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G39100"
/db_xref="Araport:AT4G39100"
intron_pos 25:1 (1/4)
intron_pos 140:2 (2/4)
intron_pos 163:2 (3/4)
intron_pos 208:0 (4/4)
BEGIN
1 MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR
61 VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK CKVHSFSSYT KLDSVGNDDF
121 FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD
181 NFYCEECSPQ QQNLHNSNST SNNRDAKVNG KRSLEVTKSK NKHTKRPG
//