LOCUS AEE86917.1 1297 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Patched family protein protein.
ACCESSION CP002687-7104
PROTEIN_ID AEE86917.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G38350"
/gene_synonym="F22I13.120"
/gene_synonym="F22I13_120"
/note="Patched family protein; FUNCTIONS IN: hedgehog
receptor activity; LOCATED IN: membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein
(InterPro:IPR004765), Patched (InterPro:IPR003392),
Sterol-sensing 5TM box (InterPro:IPR000731); BEST
Arabidopsis thaliana protein match is: Patched family
protein (TAIR:AT1G42470.1)."
/db_xref="TAIR:AT4G38350"
/db_xref="Araport:AT4G38350"
intron_pos 12:0 (1/37)
intron_pos 29:2 (2/37)
intron_pos 64:0 (3/37)
intron_pos 100:0 (4/37)
intron_pos 139:0 (5/37)
intron_pos 189:1 (6/37)
intron_pos 272:0 (7/37)
intron_pos 334:0 (8/37)
intron_pos 352:2 (9/37)
intron_pos 392:0 (10/37)
intron_pos 420:0 (11/37)
intron_pos 452:0 (12/37)
intron_pos 486:0 (13/37)
intron_pos 509:0 (14/37)
intron_pos 601:0 (15/37)
intron_pos 639:0 (16/37)
intron_pos 667:0 (17/37)
intron_pos 710:0 (18/37)
intron_pos 776:1 (19/37)
intron_pos 824:1 (20/37)
intron_pos 837:0 (21/37)
intron_pos 865:0 (22/37)
intron_pos 888:0 (23/37)
intron_pos 913:2 (24/37)
intron_pos 937:0 (25/37)
intron_pos 987:0 (26/37)
intron_pos 1009:0 (27/37)
intron_pos 1057:1 (28/37)
intron_pos 1079:0 (29/37)
intron_pos 1101:0 (30/37)
intron_pos 1132:1 (31/37)
intron_pos 1144:2 (32/37)
intron_pos 1164:0 (33/37)
intron_pos 1201:0 (34/37)
intron_pos 1223:2 (35/37)
intron_pos 1246:0 (36/37)
intron_pos 1269:0 (37/37)
BEGIN
1 MAIPTKLLLL QLFTFSLLLT ANLTHSEPSN NRHSKEYCAM YDICGHRSDG KVLNCPYASP
61 SIQPDELFSA KIQSLCPTIS GNVCCTETQF DTLRSQVQQA VPFLVGCPAC LRNFLNLFCE
121 LSCSPNQSLF INVTSVAEVS GNLTVDGIDY HITDTFGEGL YESCKEVKFG TMNTRAINFV
181 GGGAKNFREW FTFIGQKAPS GFPGSPYAIN FKSSIPESSA MVPMNVSVYS CGDTSLGCSC
241 GDCPSSPACS SPEPLPPHDE DSCSIRIGPL KVRCIELSMA LVYVLLVSCF FGWAGLNRRR
301 NTTQPLDSSK PLLHPVEEDG INSEMKENIL GVKVQRHAQL SPVQRYMAKF YRSYGSWIAR
361 NPSLVLFMSV AIVLALCSGL YNFKVETRPE KLWVGPESKA AEEKKFFDTH LSPFYRIEQL
421 ILATVPDPKS GRAPSIVTDE NILLLFDIQQ KVDQIRGNYS GSEVSLPDIC LKPLGEDCAT
481 QSILQYFKMD SGTFDDYGGV EHAEYCFQHY TSSETCLSAF QAPVDPSAVL GGFSGNNYSE
541 VMVSELGCSV PFDCYSDVKR TLFQATAFVV TYPVNNVIGD SSNENARAVA WEKSFIQLAK
601 EELLPMVRSK NLSLSFSSES SIEEELKRES TADVITIAAS YLVMFVYISV TLGDAPQFYT
661 FYISSKVLLG LSGVVLVLLS VLGSVGVFSA LGVKSTLIIM EVIPFLVLAV GVDNMCILVH
721 AVKRQPREVS LEQRISSALV EVGPSITLAS LSEVLAFAVG AFVPMPACRI FSMFAALAIM
781 LDFFLQITAF VALIVFDCKR SADNRIDCFP CIKVPSSSRE SVEGGREPGF LERYMKEVHA
841 PVLGLWGVKM VVVAVFFAFA LASIAISPRL ETGLEQKIVL PRDSYLQDYF DSLSEYLRVG
901 PPLYFVVKNY NYSSESRHTN QLCSISQCNS NSLLNEISRA SQASDTSYIA KPAASWLDDF
961 LVWLSPEAFG CCRKFTNGSY CPPDDQPPCC TAEEDICSLD GICKDCTTCF RHSDLVQDRP
1021 STAQFREKLP WFLNALPSAD CAKGGHGAYT NSVDLKGYES GVIQASEFRT YHTPLNTQGD
1081 YVNALRAARE FSSRISNSLK IDIFPYSVFY IFFEQYLNIW TVALTNLAIA IGAIFIVCWL
1141 ITSSAWSSAI IVLVLVMILV DLMGMMVILG IQLNAVSVVN LIMSIGIAVE FCVHISHAFL
1201 MSSGDREHRA REALETMGAS VFSGITLTKL VGVIVLCFAR SEIFVVYYFQ MYLALVIIGF
1261 LHGLVFLPVI LSLAGPPQLN LDIEQQQTDE ASSSLLN
//