LOCUS AEE86865.1 667 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Rhamnogalacturonate lyase family
protein protein.
ACCESSION CP002687-7035
PROTEIN_ID AEE86865.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G38030"
/gene_synonym="F20D10.150"
/gene_synonym="F20D10_150"
/inference="Similar to RNA sequence,
EST:INSD:EH915305.1,INSD:BP789801.1,INSD:DR383677.1"
/note="Rhamnogalacturonate lyase family protein; FUNCTIONS
IN: lyase activity; LOCATED IN: endomembrane system;
CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase
(InterPro:IPR010325), Carbohydrate-binding-like fold
(InterPro:IPR013784), Galactose-binding domain-like
(InterPro:IPR008979); BEST Arabidopsis thaliana protein
match is: Rhamnogalacturonate lyase family protein
(TAIR:AT2G22620.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G38030"
/db_xref="Araport:AT4G38030"
intron_pos 29:2 (1/12)
intron_pos 54:0 (2/12)
intron_pos 92:2 (3/12)
intron_pos 110:2 (4/12)
intron_pos 186:2 (5/12)
intron_pos 236:0 (6/12)
intron_pos 293:0 (7/12)
intron_pos 347:0 (8/12)
intron_pos 382:2 (9/12)
intron_pos 409:0 (10/12)
intron_pos 508:2 (11/12)
intron_pos 547:2 (12/12)
BEGIN
1 MVSQKKIASL FICFLLLLLL PLSFSKPTRN LDGISARAPT VQQIRSRHHG TREVIVDNGI
61 IRVSFSNPQG LITGIKYKGI DNVLHPHLRD RGYWDITWQG TNIRQGGLDR IEGTNFRIIT
121 QTQEQVEISF SRTWEDGHIP LNVDKRYIIR RNTSGIYMYG IFERLPEWPE LDMGLIRIAF
181 KLNPERFHYM AVADNRQREM PTEDDRDIKR GHAKALGYKE AVQLTHPHNS MFKNQVDDKY
241 QYTCEIKDNK VHGWISTKSR VGFWIISPSG EYRSGGPIKQ ELTSHVGPTA ITTFISGHYV
301 GADMEAHYRP GEAWKKVLGP VFIYLNSDST SNNKPQDLLW EDAKQQSEKE VKAWPYDFVA
361 SSDYLSRRER GSVTGRLLVN DRFLTPGKSA YVGLAPPGEA GSWQTNTKGY QFWTKTNETG
421 YFTIENVRPG TYNLYGWVPG FIGDFRYQNL VNVAAGSVIS LGRVVYKPPR NGPTLWEIGV
481 PDRTAREYFI PEPYKDTMNP LYLNHTDKFR QYGLWQRYTE LYPTHDLVYT VGVSNYSQDW
541 FYAQVTRKTG DLTYVPTIWQ IVFHLPYVNS RGSYTLQVAL ASAAWANLQV RINNQNSWPF
601 FSTGTIGKDN AIARHGIHGM YRLYTIDVPG RLLRTGTNTI YLRQPKAQGP FEGLMYDYIR
661 LEEPSRA
//