LOCUS AEE86850.1 711 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Zinc finger (C3HC4-type RING finger)
family protein protein.
ACCESSION CP002687-7009
PROTEIN_ID AEE86850.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="EDA40"
/locus_tag="AT4G37890"
/gene_synonym="embryo sac development arrest 40"
/gene_synonym="F20D10.10"
/gene_synonym="F20D10_10"
/inference="Similar to RNA sequence,
EST:INSD:BP616811.1,INSD:BP812342.1,INSD:BP614817.1,
INSD:ES159635.1,INSD:BP811675.1,INSD:BP828322.1,
INSD:EL335038.1,INSD:BX836735.1,INSD:BP819543.1,
INSD:AU229267.1,INSD:AV546627.1,INSD:EG479035.1,
INSD:ES074893.1,INSD:BP831312.1,INSD:BX840335.1,
INSD:BX836270.1,INSD:AI996207.1,INSD:BX841172.1,
INSD:BP808372.1,INSD:EG479036.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX826805.1"
/note="embryo sac development arrest 40 (EDA40); FUNCTIONS
IN: ubiquitin-protein ligase activity, zinc ion binding;
INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc
finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4
RING-type (InterPro:IPR018957), von Willebrand factor,
type A (InterPro:IPR002035); BEST Arabidopsis thaliana
protein match is: Zinc finger (C3HC4-type RING finger)
family protein (TAIR:AT2G22680.1); Has 1867 Blast hits to
1074 proteins in 263 species: Archae - 0; Bacteria - 369;
Metazoa - 130; Fungi - 203; Plants - 355; Viruses - 0;
Other Eukaryotes - 810 (source: NCBI BLink)."
/db_xref="TAIR:AT4G37890"
/db_xref="Araport:AT4G37890"
intron_pos 134:0 (1/1)
BEGIN
1 MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT
61 IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP LSFLSVSSSS STPSSPKSPA
121 SFSLLKSKLC FTKSSISSSK CGICLQSAKA GRGTAIFTAE CSHTFHFPCV ASRAGDRNLL
181 SDCPVCGASW RETSLLPLSL SSSLHESGSE SDSKIRESKN NNKSLRVYND DEPLISSPIS
241 RTGFNTIPES NEDEEEEDND DGEFKGFYVN TPSPLTTKKM LTDSVTGHVD VKLSSEAAIV
301 AVGRGNETYS VLMKIKSPSL PTARRSPVDL VTVIDVSGGN IEMVKRAMRQ VISSLRETDR
361 LSMVSFSSSS KRLTPLRRMT ANGRRLARRI VDDISGDGDG MSVNDAVKKA AKVIEDRRQK
421 NLFTTIFVLT DRNRNSAHQA QLAQPDFVTS TRFSHLEIPT HTIWLGACNH ALPEDVFAKR
481 IKSLLSLSVQ DLTLNLGLVS GSGQGKVTSV YSLSGRPVWL GSGLIRLGDM YGDEEREVLV
541 ELKSPSSSRS QRIMTVRSRH VDPTTQEIKN YEDRALMIPR PTTVRSSDPS IARLRNLHVS
601 TRAVAESRRL VEVNDYSGAE RMLTSARALL VQYGLSSSDS CLRGLEAELA DLNRLRGRHV
661 AVKSPEPVVQ KSEPLTPTSA WRAAERLAKV AIMRKHMNRV SDLHGFENAR F
//