LOCUS AEE86797.1 1052 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like
superfamily protein protein.
ACCESSION CP002687-6941
PROTEIN_ID AEE86797.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="SRFR1"
/locus_tag="AT4G37460"
/gene_synonym="F6G17.110"
/gene_synonym="F6G17_110"
/gene_synonym="SUPPRESSOR OF RPS4-RLD 1"
/inference="Similar to RNA sequence,
EST:INSD:EL324446.1,INSD:BP783949.1,INSD:ES076529.1,
INSD:EL055029.1,INSD:BG459602.1,INSD:ES025027.1,
INSD:AV529482.1,INSD:EL189915.1,INSD:EL193724.1,
INSD:ES014654.1,INSD:EL187433.1,INSD:ES200826.1,
INSD:BP836666.1,INSD:EH953415.1,INSD:DR358904.1,
INSD:EH803584.1,INSD:ES114379.1,INSD:BU635398.1,
INSD:ES009561.1,INSD:ES143144.1,INSD:AV547134.1,
INSD:DR358903.1,INSD:BP652419.1,INSD:AU238178.1,
INSD:ES003898.1,INSD:BE522375.1,INSD:AV548378.1,
INSD:AV523728.1,INSD:BE522376.1,INSD:EL112747.1,
INSD:EG525642.1,INSD:EH896328.1,INSD:EL988569.1,
INSD:EL256144.1,INSD:AU229321.1,INSD:BP660414.1,
INSD:ES061746.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX828122.1,INSD:BX828319.1"
/note="SUPPRESSOR OF RPS4-RLD 1 (SRFR1); FUNCTIONS IN:
protein complex scaffold; INVOLVED IN: defense response to
bacterium, incompatible interaction, defense response to
bacterium, negative regulation of transcription, negative
regulation of defense response; LOCATED IN: nucleus,
perinuclear region of cytoplasm, cytoplasm; EXPRESSED IN:
25 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1
(InterPro:IPR001440), Tetratricopeptide-like helical
(InterPro:IPR011990), Tetratricopeptide repeat-containing
(InterPro:IPR013026), Tetratricopeptide repeat
(InterPro:IPR019734); BEST Arabidopsis thaliana protein
match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT3G04240.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G37460"
/db_xref="Araport:AT4G37460"
intron_pos 43:2 (1/22)
intron_pos 80:1 (2/22)
intron_pos 308:0 (3/22)
intron_pos 323:0 (4/22)
intron_pos 357:0 (5/22)
intron_pos 384:0 (6/22)
intron_pos 406:1 (7/22)
intron_pos 440:0 (8/22)
intron_pos 476:0 (9/22)
intron_pos 499:2 (10/22)
intron_pos 518:2 (11/22)
intron_pos 554:0 (12/22)
intron_pos 581:0 (13/22)
intron_pos 610:0 (14/22)
intron_pos 679:0 (15/22)
intron_pos 787:2 (16/22)
intron_pos 816:2 (17/22)
intron_pos 850:0 (18/22)
intron_pos 880:2 (19/22)
intron_pos 894:2 (20/22)
intron_pos 925:0 (21/22)
intron_pos 957:2 (22/22)
BEGIN
1 MATATATSER FELAKHCSSR NWSKAIRVLD SLLAKESSIL DICNRAFCYN QLELHKHVIK
61 DCDKALLLEP FAIQAFILKG RALLALGRKQ EAVLVLEQGY KSALQQTADV KQLLELEELL
121 KDARREIDGI LKSHATESPQ ETPAYHSEKS DEKSDKLDNH ESGASSNGNS HESSSELGEQ
181 SKIVSFSKVA SKASKQSDGN SDLCNGSVYK EKENGKCGSQ INGYYESCKP CNGSDLHDNL
241 AESSDRFGEL SINGNKISIK SSKMSHKAEA RCGISDESRK NKKYTIARIS GTHSISVDFR
301 LSRGIAQVNE GNYTKAISIF DKVLKEEPTY PEALIGRGTA YAFQRELESA IADFTKAIQS
361 NPAASEAWKR RGQARAALGE YVEAVEDLTK ALVFEPNSPD VLHERGIVNF KSKDFTAAVK
421 DLSICLKQEK DNKSAYTYLG LAFASLGEYK KAEEAHLKSI QLDSNYLEAW LHLAQFYQEL
481 ADHCKALECI EQVLQVDNRV WKAYHLRGLV FHGLGEHRKA IQELSIGLSI ENTIECLYLR
541 GSCYHAVGEY RDAVKDYDAT VDVELDAVEK FVLQCLAFYQ KELALYTASK VSSEFLCFDI
601 DGDIDPMFKE YWCKRLHPKN VCEKVYRQPP LRESLKKGKL KKQDLAITKQ KANILRFADL
661 IGKRIQYDCP GFLPNKRQHR MAGLAVIEIA QKVSKAWRIE WRNSTKGTTK NGKKNRRRER
721 TNILSQNRGG AGCSSSSFSE TSTGYASLED RSSGRSILSW QDVYSPAVRW RQISEPCDPV
781 VWVNKLSEEF NSGFGSHTPM VLGQAKVVRY FPNYERTLTL AKSIIKDKLS VRSKKDKVID
841 LSKDEKIEKI MRAETCDELH NIVGEDFWVA TWCDSTGSEG KRLEGTRITC IQKPGRLGYD
901 FSIRTPCTPA RWSDFDEEMT SAWEALCTAY CGENYGSTEL DALETVRDAI LRMTYYWYNF
961 MPLARGTAVT GFVVLLGLLL AANMEFTETI PKGLQIDWEA ILNVEPGSFV DSVKSWLYPS
1021 LKINTSWRDH TEISSAFSTT GAVVAALSTY ND
//