LOCUS AEE86756.1 536 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pre-mRNA splicing Prp18-interacting
factor protein.
ACCESSION CP002687-6890
PROTEIN_ID AEE86756.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="SMP2"
/locus_tag="AT4G37120"
/gene_synonym="AP22.39"
/gene_synonym="AP22_39"
/gene_synonym="SWELLMAP 2"
/inference="Similar to RNA sequence,
EST:INSD:ES146181.1,INSD:EH927830.1,INSD:ES146632.1,
INSD:EL112866.1,INSD:ES183142.1,INSD:EL102812.1,
INSD:EH876401.1,INSD:CB260818.1,INSD:EG477851.1,
INSD:EL266703.1,INSD:EH872966.1,INSD:EL246741.1,
INSD:EL085620.1,INSD:BP655531.1,INSD:CD530552.1,
INSD:EL120594.1,INSD:ES029281.1,INSD:EG491328.1,
INSD:BP820862.1,INSD:EH914294.1,INSD:EL314736.1,
INSD:ES073143.1,INSD:AA712501.1,INSD:AV565186.1,
INSD:EH909729.1,INSD:ES076604.1,INSD:ES146618.1,
INSD:EH944964.1,INSD:EL206019.1,INSD:EH904024.1,
INSD:EL096647.1,INSD:EH955886.1,INSD:EH912607.1,
INSD:EL171083.1,INSD:EH849327.1,INSD:AV828772.1,
INSD:BP573442.1,INSD:BP803361.1,INSD:EL999408.1,
INSD:EL285024.1,INSD:ES056931.1,INSD:ES129100.1,
INSD:EL175860.1,INSD:BP812510.1,INSD:EH837517.1,
INSD:EH830267.1,INSD:EL279233.1,INSD:AA394956.1,
INSD:EH972936.1,INSD:ES170537.1,INSD:EL122151.1,
INSD:EH950485.1,INSD:AV812652.1,INSD:EL988537.1,
INSD:ES144512.1,INSD:EL062906.1,INSD:BP786692.1,
INSD:BP572283.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX828841.1,INSD:AY056418.1"
/note="SWELLMAP 2 (SMP2); CONTAINS InterPro DOMAIN/s: Zinc
finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing
Prp18-interacting factor (InterPro:IPR021715); BEST
Arabidopsis thaliana protein match is: Pre-mRNA splicing
Prp18-interacting factor (TAIR:AT1G65660.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G37120"
/db_xref="Araport:AT4G37120"
intron_pos 6:1 (1/7)
intron_pos 61:0 (2/7)
intron_pos 236:2 (3/7)
intron_pos 282:0 (4/7)
intron_pos 382:0 (5/7)
intron_pos 454:1 (6/7)
intron_pos 489:0 (7/7)
BEGIN
1 MATASVAFKS REDHRKKLEL EEARKAGLAP AEVDEDGKEI NPHIPEYMSK APWYLKSEQP
61 SLKHQKNWKI EPEPKKIWYD RGKKIYQAEQ YRKGACINCG AMTHSSKACM DRPRKIGAKY
121 TNMNIAADEK IESFELDYDG KRDRWNGYDT STYRHVVDRY DAKEEARKKY LKEQQLKKLE
181 EKNNNENGDD ATSDGEEDLD DLRVDEAKVD ESRQMDFAKV EKRVRTTGGG STGTVRNLRI
241 REDTAKYLLN LDVNSAHYDP KTRSMREDPL PDADPNEKFY LGDNQYRNSG QALEFKQINI
301 HSCEAFDKGH DMHMQAAPSQ AELLYKNFKV AKEKLKTQTK DTIMEKYGNA ATEGEIPMEL
361 LLGQSERQIE YDRAGRIMKG QEVIIPKSKY EEDVHANNHT SVWGSWWKDH QWGYKCCQQT
421 IRNSYCTGSA GIEAAEASID LMKANIARKE ASKESPKKVE EKKMATWGTD IPEDLELNEE
481 ALANALKKED LSRREEKDER KRKYNVNYTN DVTSEEMEAY RMKRVHHEDP MRNFPG
//