LOCUS AEE86690.1 551 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana U2 snRNP auxilliary factor, large
subunit, splicing factor protein.
ACCESSION CP002687-6804
PROTEIN_ID AEE86690.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="ATU2AF65A"
/locus_tag="AT4G36690"
/gene_synonym="AP22.29"
/gene_synonym="AP22_29"
/note="ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide
binding, nucleic acid binding; INVOLVED IN: nuclear mRNA
splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif,
RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta
plait (InterPro:IPR012677), U2 snRNP auxilliary factor,
large subunit, splicing factor (InterPro:IPR006529); BEST
Arabidopsis thaliana protein match is: U2 snRNP auxilliary
factor, large subunit, splicing factor
(TAIR:AT1G60900.1)."
/db_xref="TAIR:AT4G36690"
/db_xref="Araport:AT4G36690"
intron_pos 39:0 (1/12)
intron_pos 118:1 (2/12)
intron_pos 145:2 (3/12)
intron_pos 170:1 (4/12)
intron_pos 196:0 (5/12)
intron_pos 212:0 (6/12)
intron_pos 232:0 (7/12)
intron_pos 252:1 (8/12)
intron_pos 290:0 (9/12)
intron_pos 439:0 (10/12)
intron_pos 484:1 (11/12)
intron_pos 507:0 (12/12)
BEGIN
1 MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR
61 DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS SRHRDHSRER GERRERGGGR
121 RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP
181 GAGMFPNMFP LPTGQSFGGL SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV
241 MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301 YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF
361 GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG IKMGDKTLTV RRANQGTMLQ
421 KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG
481 GKFGALTNVV IPRPSPNGEP VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP
541 EDKFEQGDYG A
//