LOCUS AEE86603.1 299 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana cold shock domain protein 1 protein.
ACCESSION CP002687-6705
PROTEIN_ID AEE86603.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="CSDP1"
/locus_tag="AT4G36020"
/gene_synonym="AtCSP1"
/gene_synonym="cold shock domain protein 1"
/gene_synonym="cold shock protein 1"
/gene_synonym="CSP1"
/gene_synonym="T19K4.150"
/gene_synonym="T19K4_150"
/inference="Similar to RNA sequence,
EST:INSD:DR295330.1,INSD:ES045727.1,INSD:ES169650.1,
INSD:AA597996.1,INSD:AA395543.1,INSD:DR751023.1,
INSD:DR295332.1,INSD:ES060574.1,INSD:AA597391.1,
INSD:CK121080.1,INSD:EH801922.1,INSD:DR295326.1,
INSD:EL245793.1,INSD:EL222204.1,INSD:DR750748.1,
INSD:EL270887.1,INSD:EL160406.1,INSD:DR380393.1,
INSD:DR295331.1,INSD:ES072677.1,INSD:ES006043.1,
INSD:EH804428.1,INSD:EL340779.1,INSD:EG493036.1,
INSD:DR295328.1,INSD:AV555232.1,INSD:AI996732.1,
INSD:EH804906.1,INSD:DR295325.1,INSD:EH993183.1,
INSD:EL304028.1,INSD:DR295329.1,INSD:EL160731.1,
INSD:AV522120.1,INSD:ES067129.1,INSD:T45249.1,
INSD:DR295336.1,INSD:AA597995.1,INSD:DR295333.1,
INSD:EH866590.1,INSD:EH918285.1,INSD:BP780418.1,
INSD:DR295334.1,INSD:EH838174.1,INSD:EL072665.1,
INSD:AV559102.1,INSD:AA597466.1,INSD:DR295335.1,
INSD:DR295327.1,INSD:ES046835.1,INSD:EH823410.1,
INSD:EL155731.1,INSD:BP785517.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK226815.1,INSD:AY088982.1,INSD:AF370570.1"
/note="cold shock domain protein 1 (CSDP1); CONTAINS
InterPro DOMAIN/s: Nucleic acid-binding, OB-fold
(InterPro:IPR012340), Cold-shock conserved site
(InterPro:IPR019844), Zinc finger, CCHC retroviral-type
(InterPro:IPR013084), Cold shock protein
(InterPro:IPR011129), Nucleic acid-binding, OB-fold-like
(InterPro:IPR016027), Zinc finger, CCHC-type
(InterPro:IPR001878), Cold-shock protein, DNA-binding
(InterPro:IPR002059); BEST Arabidopsis thaliana protein
match is: cold shock domain protein 3 (TAIR:AT2G17870.1);
Has 93964 Blast hits to 39618 proteins in 2725 species:
Archae - 55; Bacteria - 19157; Metazoa - 4501; Fungi -
1919; Plants - 2885; Viruses - 60267; Other Eukaryotes -
5180 (source: NCBI BLink)."
/db_xref="TAIR:AT4G36020"
/db_xref="Araport:AT4G36020"
BEGIN
1 MASEDQSAAR STGKVNWFNA SKGYGFITPD DGSVELFVHQ SSIVSEGYRS LTVGDAVEFA
61 ITQGSDGKTK AVNVTAPGGG SLKKENNSRG NGARRGGGGS GCYNCGELGH ISKDCGIGGG
121 GGGGERRSRG GEGCYNCGDT GHFARDCTSA GNGDQRGATK GGNDGCYTCG DVGHVARDCT
181 QKSVGNGDQR GAVKGGNDGC YTCGDVGHFA RDCTQKVAAG NVRSGGGGSG TCYSCGGVGH
241 IARDCATKRQ PSRGCYQCGG SGHLARDCDQ RGSGGGGNDN ACYKCGKEGH FARECSSVA
//