LOCUS AEE86573.1 1839 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA polymerase II large subunit protein.
ACCESSION CP002687-6654
PROTEIN_ID AEE86573.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="NRPB1"
/locus_tag="AT4G35800"
/gene_synonym="F4B14.70"
/gene_synonym="F4B14_70"
/gene_synonym="RNA polymerase II large subunit"
/gene_synonym="RNA POLYMERASE II LARGE SUBUNIT"
/gene_synonym="RNA_POL_II_LS"
/gene_synonym="RNA_POL_II_LSRNA_POL_II_LS"
/gene_synonym="RPB1"
/inference="Similar to RNA sequence,
EST:INSD:AV529513.1,INSD:EL001743.1,INSD:ES076744.1,
INSD:ES014751.1,INSD:EH856227.1,INSD:EL022232.1,
INSD:AV554811.1,INSD:AV546119.1,INSD:EH961547.1,
INSD:AV523886.1,INSD:EL295851.1,INSD:ES081344.1,
INSD:EL033260.1,INSD:ES040114.1,INSD:T45030.1,
INSD:AV547057.1,INSD:AV548708.1,INSD:EH808821.1,
INSD:AV554798.1,INSD:DR354557.1,INSD:EL237055.1,
INSD:EH813706.1,INSD:ES030120.1,INSD:ES186100.1,
INSD:AV545826.1,INSD:EL250326.1,INSD:AV529650.1,
INSD:AV556763.1,INSD:EL027500.1,INSD:AV530018.1,
INSD:EL143612.1,INSD:EH992720.1,INSD:ES104750.1,
INSD:EL316983.1,INSD:BP833580.1,INSD:BP636667.1,
INSD:ES030860.1,INSD:EH969346.1,INSD:AI994941.1,
INSD:EL126186.1,INSD:AV545813.1,INSD:EL022096.1,
INSD:EL023179.1,INSD:AV533967.1,INSD:EL098473.1,
INSD:ES078743.1,INSD:EL058948.1,INSD:EH974765.1,
INSD:AV560562.1,INSD:EH976537.1,INSD:AV523757.1,
INSD:EL066882.1,INSD:EG503883.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX828750.1,INSD:AK221166.1"
/note="RNA polymerase II large subunit (NRPB1); FUNCTIONS
IN: DNA-directed RNA polymerase activity, DNA binding;
INVOLVED IN: transcription, transcription from RNA
polymerase II promoter; LOCATED IN: nucleus, chloroplast,
DNA-directed RNA polymerase II, core complex, vacuole;
EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase,
N-terminal (InterPro:IPR006592), RNA polymerase, alpha
subunit (InterPro:IPR000722), RNA polymerase II,
heptapeptide repeat, eukaryotic (InterPro:IPR000684), RNA
polymerase Rpb1, domain 7 (InterPro:IPR007073), RNA
polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA
polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA
polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA
polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA
polymerase Rpb1, domain 6 (InterPro:IPR007075); BEST
Arabidopsis thaliana protein match is: nuclear RNA
polymerase C1 (TAIR:AT5G60040.1); Has 181834 Blast hits to
82224 proteins in 9254 species: Archae - 731; Bacteria -
33255; Metazoa - 56600; Fungi - 34284; Plants - 19037;
Viruses - 3576; Other Eukaryotes - 34351 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G35800"
/db_xref="Araport:AT4G35800"
intron_pos 29:0 (1/12)
intron_pos 117:0 (2/12)
intron_pos 218:0 (3/12)
intron_pos 271:0 (4/12)
intron_pos 325:0 (5/12)
intron_pos 398:2 (6/12)
intron_pos 446:0 (7/12)
intron_pos 558:0 (8/12)
intron_pos 653:2 (9/12)
intron_pos 740:0 (10/12)
intron_pos 1760:2 (11/12)
intron_pos 1784:2 (12/12)
BEGIN
1 MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI
61 DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS IMRCVCFNCS KILADEEEHK
121 FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT
181 IEGMKMIAEY KIQRKKNDEP DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA
241 RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
301 SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA
361 RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK ELVDYGPHPP PGKTGAKYII
421 RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS
481 TFRLNLSVTS PYNADFDGDE MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD
541 TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
601 NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA
661 ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE TISNAKTAVK DLIRQFQGKE
721 LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM
781 TACVGQQNVE GKRIPFGFDG RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR
841 EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
901 KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF
961 QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD MHPVEIVDAV DKLQERLLVV
1021 PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP
1081 GEMIGCVAAQ SIGEPATQMT LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL
1141 TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201 VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI
1261 MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI NKVFIKQVRK SRFDEEGGFK
1321 TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD
1381 GSYVNYRHLA ILCDTMTYRG HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD
1441 CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501 PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP
1561 TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY SPTSPSYSPT SPSYSPTSPS
1621 YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT
1681 SPSYSPTSPS YSPTSPAYSP TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS
1741 PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801 SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
//