LOCUS AEE86566.1 239 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002687-6644
PROTEIN_ID AEE86566.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G35785"
/inference="Similar to RNA sequence,
EST:INSD:BP792845.1,INSD:Z26080.1,INSD:BP615663.1,
INSD:ES210331.1,INSD:ES093065.1,INSD:DR269012.1,
INSD:EL125101.1,INSD:EH857405.1,INSD:DR375000.1,
INSD:BP632183.1,INSD:EL299613.1,INSD:AU236779.1,
INSD:EH985445.1,INSD:BP795415.1,INSD:EG466380.1,
INSD:DR269014.1,INSD:ES206376.1,INSD:ES153797.1,
INSD:EH850297.1,INSD:ES113334.1,INSD:ES100144.1,
INSD:EL249219.1,INSD:Z25582.1,INSD:ES076801.1,
INSD:ES084116.1,INSD:DR269013.1,INSD:ES066115.1,
INSD:EL980839.1,INSD:BP782866.1,INSD:EH964004.1,
INSD:ES092156.1,INSD:EL124160.1,INSD:ES040268.1,
INSD:EG466391.1,INSD:ES103647.1,INSD:BP856376.1,
INSD:ES034736.1,INSD:ES130080.1,INSD:CK117949.1,
INSD:AU227759.1,INSD:ES139082.1,INSD:ES165564.1,
INSD:ES167085.1,INSD:EH987157.1,INSD:ES169077.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX829365.1,INSD:BT004226.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: nucleotide binding, nucleic acid binding;
INVOLVED IN: biological_process unknown; LOCATED IN:
ribonucleoprotein complex, chloroplast; EXPRESSED IN:
cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: RNA-binding (RRM/RBD/RNP
motifs) family protein (TAIR:AT1G07350.1); Has 8909 Blast
hits to 6784 proteins in 2360 species: Archae - 138;
Bacteria - 6148; Metazoa - 581; Fungi - 681; Plants - 158;
Viruses - 0; Other Eukaryotes - 1203 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G35785"
/db_xref="Araport:AT4G35785"
intron_pos 2:0 (1/7)
intron_pos 9:2 (2/7)
intron_pos 56:2 (3/7)
intron_pos 64:2 (4/7)
intron_pos 98:0 (5/7)
intron_pos 148:0 (6/7)
intron_pos 171:1 (7/7)
BEGIN
1 MADSPQRRRD SRSPSPRKER ARSRSRSRSR SRSRPRLRSR SRSLPRPVSP SRSRGRSRSR
61 SRGRSEVENP GTTLYVTGLS TRVTDKDLEA HFAKEGKVAS CFLVMEPRTR VSRGFAFVTM
121 SSLKDAERCI KYLNQSVLEG RYITVERSRR KRPRTPTPGH YLGLKSSRDS DREGRSSRGR
181 HYDRDDYRDR RSPRRDYSPR DERRSRRDRS YSPHGRSPER RSERRSERSE RRYEPRGSR
//