LOCUS AEE86532.1 125 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana high mobility group B5 protein.
ACCESSION CP002687-6604
PROTEIN_ID AEE86532.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="HMGB5"
/locus_tag="AT4G35570"
/gene_synonym="F8D20.80"
/gene_synonym="F8D20_80"
/gene_synonym="high mobility group B5"
/gene_synonym="HMGD"
/gene_synonym="NFD05"
/gene_synonym="NFD5"
/gene_synonym="NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5"
/inference="Similar to RNA sequence,
EST:INSD:EG514209.1,INSD:BP835160.1,INSD:EG432428.1,
INSD:BP820260.1,INSD:DR208469.1,INSD:ES209758.1,
INSD:EL138070.1,INSD:DR217009.1,INSD:DR208470.1,
INSD:DR216997.1,INSD:DR208466.1,INSD:ES187721.1,
INSD:ES171679.1,INSD:BP582056.1,INSD:DR749940.1,
INSD:DR216996.1,INSD:DR217003.1,INSD:ES203890.1,
INSD:DR217005.1,INSD:BP643757.1,INSD:EG432425.1,
INSD:DR749939.1,INSD:DR217012.1,INSD:ES069193.1,
INSD:DR217000.1,INSD:DR208468.1,INSD:BP654482.1,
INSD:DR217011.1,INSD:DR216995.1,INSD:ES038312.1,
INSD:DR208471.1,INSD:ES183772.1,INSD:DR216998.1,
INSD:BP783851.1,INSD:DR216999.1,INSD:DR217001.1,
INSD:BP657212.1,INSD:EH912223.1,INSD:DR378075.1,
INSD:AU227190.1,INSD:DR208467.1,INSD:AW004449.1,
INSD:DR374769.1,INSD:DR217006.1,INSD:DR217007.1,
INSD:CB255095.1,INSD:DR217010.1,INSD:DR217004.1"
/inference="Similar to RNA sequence,
mRNA:INSD:Y14075.1,INSD:BT025597.1,INSD:AY085615.1,
INSD:BX828831.1,INSD:BX829174.1"
/note="high mobility group B5 (HMGB5); CONTAINS InterPro
DOMAIN/s: High mobility group, superfamily
(InterPro:IPR009071), High mobility group, HMG1/HMG2
(InterPro:IPR000910); BEST Arabidopsis thaliana protein
match is: high mobility group B4 (TAIR:AT2G17560.2); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
/db_xref="TAIR:AT4G35570"
/db_xref="Araport:AT4G35570"
intron_pos 16:2 (1/5)
intron_pos 45:2 (2/5)
intron_pos 65:0 (3/5)
intron_pos 80:0 (4/5)
intron_pos 107:0 (5/5)
BEGIN
1 MKDNQTEVES RSTDDRLKVR GNKVGKKTKD PNRPKKPPSP FFVFLDDFRK EFNLANPDNK
61 SVGNVGRAAG KKWKTMTEEE RAPFVAKSQS KKTEYAVTMQ QYNMELANGN KTTGDDEKQE
121 KAADD
//