LOCUS AEE86403.1 410 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana squalene synthase 1 protein.
ACCESSION CP002687-6413
PROTEIN_ID AEE86403.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="SQS1"
/locus_tag="AT4G34640"
/gene_synonym="ERG9"
/gene_synonym="SQUALENE SYNTHASE"
/gene_synonym="squalene synthase 1"
/gene_synonym="T4L20.220"
/gene_synonym="T4L20_220"
/inference="Similar to RNA sequence,
EST:INSD:EL169308.1,INSD:BU636785.1,INSD:EH883830.1,
INSD:ES135390.1,INSD:ES022876.1,INSD:AV563340.1,
INSD:AV564913.1,INSD:EL994585.1,INSD:DR272755.1,
INSD:EH933363.1,INSD:EH950028.1,INSD:DR272754.1,
INSD:DR272748.1,INSD:EL275624.1,INSD:EL277926.1,
INSD:DR272751.1,INSD:ES070385.1,INSD:AV561639.1,
INSD:DR272759.1,INSD:AV818234.1,INSD:EH856083.1,
INSD:DR272766.1,INSD:EL070528.1,INSD:EL995292.1,
INSD:DR272745.1,INSD:BP842359.1,INSD:BP627060.1,
INSD:BP632045.1,INSD:EH948123.1,INSD:EL226167.1,
INSD:BP779355.1,INSD:EH895138.1,INSD:EL241749.1,
INSD:ES178017.1,INSD:DR272749.1,INSD:DR272760.1,
INSD:BP853976.1,INSD:DR272752.1,INSD:ES003931.1,
INSD:EL043480.1,INSD:DR374394.1,INSD:BP847453.1,
INSD:ES042544.1,INSD:BP858945.1,INSD:EH839740.1,
INSD:DR272750.1,INSD:BP586846.1,INSD:DR272757.1,
INSD:ES073009.1,INSD:BP626146.1,INSD:DR272762.1,
INSD:EL040730.1,INSD:N65466.1,INSD:AV537467.1,
INSD:AV542622.1,INSD:BP659982.1,INSD:AV551446.1,
INSD:DR272753.1,INSD:ES009632.1,INSD:BP605609.1,
INSD:DR272761.1,INSD:ES021616.1,INSD:EH898868.1,
INSD:EL174554.1,INSD:BP845744.1,INSD:BP609446.1,
INSD:EL038988.1,INSD:DR272763.1,INSD:BP790471.1,
INSD:EL192498.1,INSD:EL083763.1,INSD:EL040567.1,
INSD:BE525969.1,INSD:AV831932.1,INSD:EH821158.1,
INSD:EL012037.1,INSD:DR272764.1,INSD:EL032273.1,
INSD:EH899194.1,INSD:EL161576.1,INSD:BP786459.1"
/inference="Similar to RNA sequence,
mRNA:INSD:U79159.1,INSD:BT003419.1,INSD:BX827201.1,
INSD:D29017.1,INSD:AY099868.1,INSD:X86692.1"
/note="squalene synthase 1 (SQS1); FUNCTIONS IN:
farnesyl-diphosphate farnesyltransferase activity;
INVOLVED IN: sterol biosynthetic process; LOCATED IN:
endoplasmic reticulum, plasma membrane, endoplasmic
reticulum membrane; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Squalene/phytoene synthase, conserved site
(InterPro:IPR019845), Terpenoid synthase
(InterPro:IPR008949), Farnesyl-diphosphate
farnesyltransferase (InterPro:IPR006449),
Squalene/phytoene synthase (InterPro:IPR002060); BEST
Arabidopsis thaliana protein match is: squalene synthase 2
(TAIR:AT4G34650.1); Has 1469 Blast hits to 1468 proteins
in 521 species: Archae - 28; Bacteria - 581; Metazoa -
114; Fungi - 174; Plants - 415; Viruses - 0; Other
Eukaryotes - 157 (source: NCBI BLink)."
/db_xref="TAIR:AT4G34640"
/db_xref="Araport:AT4G34640"
intron_pos 66:0 (1/12)
intron_pos 80:1 (2/12)
intron_pos 110:1 (3/12)
intron_pos 135:2 (4/12)
intron_pos 159:0 (5/12)
intron_pos 209:0 (6/12)
intron_pos 244:0 (7/12)
intron_pos 293:0 (8/12)
intron_pos 318:1 (9/12)
intron_pos 348:0 (10/12)
intron_pos 378:2 (11/12)
intron_pos 393:0 (12/12)
BEGIN
1 MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT
61 ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH IYDTDWHYSC GTKEYKILMD
121 QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL
181 SKLFLAAGSE VLTPDWEAIS NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD
241 KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301 LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN
361 RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL AIVFAYLRAN
//