LOCUS AEE86376.1 985 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DNA-binding family protein protein.
ACCESSION CP002687-6373
PROTEIN_ID AEE86376.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="CHB3"
/locus_tag="AT4G34430"
/gene_synonym="ATSWI3D"
/gene_synonym="F10M10.200"
/gene_synonym="F10M10_200"
/gene_synonym="SWITCH/SUCROSE NONFERMENTING 3D"
/inference="Similar to RNA sequence,
EST:INSD:EH917592.1,INSD:EH863735.1,INSD:EL336647.1,
INSD:EL123854.1,INSD:EL181214.1,INSD:EL036022.1,
INSD:EH849435.1,INSD:EL012687.1,INSD:EL327222.1,
INSD:EL012835.1,INSD:EL112024.1,INSD:ES212538.1,
INSD:EL157335.1,INSD:EL979815.1,INSD:CB518225.1,
INSD:EL337918.1,INSD:EH934253.1,INSD:ES016703.1,
INSD:EL214542.1,INSD:ES110910.1,INSD:AV548894.1,
INSD:ES023619.1,INSD:EL027069.1,INSD:EL211463.1,
INSD:AV561835.1,INSD:EL992404.1,INSD:AV561878.1,
INSD:ES022874.1,INSD:BP562550.2,INSD:CB518226.1,
INSD:EL976930.1,INSD:EL971250.1,INSD:EH831236.1,
INSD:AU229241.1,INSD:AU238104.1,INSD:ES208694.1,
INSD:EL169559.1,INSD:EH892679.1,INSD:EH866453.1,
INSD:EL010487.1,INSD:CB260073.1,INSD:ES004180.1,
INSD:ES188876.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY096454.1"
/note="CHB3; FUNCTIONS IN: DNA binding, sequence-specific
DNA binding transcription factor activity, zinc ion
binding; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like
(InterPro:IPR009057), Myb, DNA-binding
(InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT,
eukarya (InterPro:IPR017884), Zinc finger, ZZ-type
(InterPro:IPR000433); BEST Arabidopsis thaliana protein
match is: SWITCH/sucrose nonfermenting 3C
(TAIR:AT1G21700.1); Has 16471 Blast hits to 10991 proteins
in 902 species: Archae - 40; Bacteria - 1696; Metazoa -
6618; Fungi - 2331; Plants - 955; Viruses - 102; Other
Eukaryotes - 4729 (source: NCBI BLink)."
/db_xref="TAIR:AT4G34430"
/db_xref="Araport:AT4G34430"
intron_pos 152:1 (1/6)
intron_pos 328:0 (2/6)
intron_pos 551:0 (3/6)
intron_pos 605:2 (4/6)
intron_pos 805:1 (5/6)
intron_pos 869:0 (6/6)
BEGIN
1 MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT
61 REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN VAVGADGEKP KEEEERNKAI
121 REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS
181 EVYREIRNWI MGKFHSNPNI QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD
241 TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301 QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP
361 GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ CMLHFLQMPI EDAFLDQIDY
421 KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK
481 PGDASEETNE MEAEQKTPKL ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF
541 ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601 TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ
661 PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ DKCSGKELQE PLKDGNKLSS
721 ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV
781 LSTPDKSVSQ QPIGSASAPE NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS
841 AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901 YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP
961 GSFVAATTMT GSSDPSPGSD NVSSV
//