LOCUS AEE85878.1 1284 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DNA topoisomerase, type IA, core protein.
ACCESSION CP002687-5685
PROTEIN_ID AEE85878.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G31210"
/gene_synonym="F8F16.30"
/gene_synonym="F8F16_30"
/inference="Similar to RNA sequence,
EST:INSD:EL021107.1,INSD:ES041104.1,INSD:AV441179.1,
INSD:ES104562.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX826794.1,INSD:BX841517.1"
/note="DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA
topoisomerase activity, DNA topoisomerase type I activity,
DNA binding, nucleic acid binding; INVOLVED IN: DNA
topological change, DNA unwinding involved in replication,
DNA metabolic process; LOCATED IN: chromosome; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 14 growth
stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase,
type IA, zn finger (InterPro:IPR013498), DNA
topoisomerase, type IA, core (InterPro:IPR000380), DNA
topoisomerase, type IA, DNA-binding (InterPro:IPR003602),
DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601),
DNA topoisomerase, type IA, central (InterPro:IPR013497),
DNA topoisomerase, type IA, central region, subdomain 3
(InterPro:IPR013826), DNA topoisomerase I, bacterial-type
(InterPro:IPR005733), Toprim domain, subgroup
(InterPro:IPR006154), DNA topoisomerase, type IA, central
region, subdomain 1 (InterPro:IPR013824), Toprim domain
(InterPro:IPR006171); BEST Arabidopsis thaliana protein
match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has
21441 Blast hits to 18441 proteins in 2923 species: Archae
- 440; Bacteria - 10015; Metazoa - 1777; Fungi - 750;
Plants - 256; Viruses - 35; Other Eukaryotes - 8168
(source: NCBI BLink)."
/db_xref="TAIR:AT4G31210"
/db_xref="Araport:AT4G31210"
intron_pos 28:0 (1/22)
intron_pos 242:0 (2/22)
intron_pos 409:0 (3/22)
intron_pos 544:2 (4/22)
intron_pos 758:0 (5/22)
intron_pos 787:0 (6/22)
intron_pos 802:2 (7/22)
intron_pos 839:1 (8/22)
intron_pos 873:0 (9/22)
intron_pos 904:0 (10/22)
intron_pos 933:0 (11/22)
intron_pos 961:0 (12/22)
intron_pos 984:0 (13/22)
intron_pos 1004:0 (14/22)
intron_pos 1028:0 (15/22)
intron_pos 1064:0 (16/22)
intron_pos 1089:2 (17/22)
intron_pos 1117:2 (18/22)
intron_pos 1155:0 (19/22)
intron_pos 1185:0 (20/22)
intron_pos 1207:0 (21/22)
intron_pos 1239:0 (22/22)
BEGIN
1 MQRTISLAAA KSSSSTSVLS LHPLMAKLQC RAIQNFPASS SSSVVRVDRV YRNVSQLQFK
61 RENSSCLKLA CALPSHLSLL GSLSYATHWS SSTSRAFGYS FRPFARRYFS QVASTEIKDS
121 IVGGVEKFGG NKIGFKKFNK KWKKHRVLAS TKAEVVASTE PVIGDVNSGI KAKLSTAASP
181 ASNAKQASTV KTKRQPKSKK FEDKSSPTVS VLETVSVDES LQSFPKPRHS GSGNRKSSSA
241 EYSSQKEVVK KTNVEGPKSS TPSNSMSEQQ HWTSTKASNA PKQEQDNIVG GDEKAGGNKV
301 GFKKFNKNRK KHNVLASSEA EVVTSTEPVI GDGSSGIKAE LSTAASPASN GNQATTVKSK
361 RRPKNKKVED KSSSVVPVLE AVSLDESPIS VPKPKHSGSG NRKSSSAKKE VAKNHPVEEP
421 KSPAPSNSKS EQQHLKSTKA SKAPKQKLVP QHMKNSIEHR GQNASKPLYP PSGKSVIVVE
481 SMTKAKIIQG YLGDMYEVLP SYGHIRDLAT RSGSVRPDDD FSMVWEVPSS AWTHIKSIKV
541 ALNGAENLIL ASDPDREGEA IAWHIIEMLQ QQGALHESMT VARVVFHEIT ESAIKSALQS
601 PREIDGDLVH AYLARRALDY LIGFNISPLL WRKLPGCPSA GRVQSAALAL VCDRESEIDG
661 FKPQEYWTVG IKVKGKDNSA TFSAHLTSLN SKRLNQLSIS SEANAQDIEQ RIKSEGFLVK
721 GTKTSTTRKN PPTPYITSTL QQDAANKLHF STAHTMKLAQ KLYEGVQLSD GKSAGLITYM
781 RTDGLHIADE AIKDIQSLVA ERYGKNFTSD SPRKYFKKVK NAQEAHEAIR PTDIRRLPST
841 IASLLDADSL KLYTLIWSRA VACQMEPASI AQIQLDIGNA SESIIFRSSC SKVEFLGYQA
901 VYEDPEAKAI KNNDNDQSSE REETFKTLSS LKDGDLLQIG EVELKQHHTQ HPPRYSEGSL
961 VKKLEELGIG RPSTYASIFR VLQHRKYVTI KNRVLYPEFR ARMVSAFLTH YFTEITDYSF
1021 TADMETELDN VSGGVTEWKG LLRDYWTRFS AYCKRVENVQ RSQVEKMLEK KYEDVLFSLL
1081 PYPSRTCPSC MEGTLSFKAS KFGAGYFIGC DQHPSCKFIA KTLYGEDEDE DDPPKNNCVE
1141 EPKLLGLHPN TSEKVILKCG PYGHYVQLGE DKKGHTPKRA NAAHIKDVNS ITLESALELL
1201 RYPLTLGTHP EDGQPVVLKL SKSGFTIKHR RNMATVPKNT EPGEVTLERA MKLLSGKNVR
1261 KSGRPPKSIL PEEEKGDEEV VVAI
//