LOCUS AEE85875.1 650 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana SWAP (Suppressor-of-White-APricot)
/surp RNA-binding domain-containing protein protein.
ACCESSION CP002687-5682
PROTEIN_ID AEE85875.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G31200"
/gene_synonym="F8F16.10"
/gene_synonym="F8F16_10"
/inference="Similar to RNA sequence,
EST:INSD:ES120067.1,INSD:BX835884.1,INSD:BE526177.1,
INSD:AV538702.1,INSD:ES111830.1,INSD:ES172547.1,
INSD:AU230096.1,INSD:EG452231.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX827277.1,INSD:BX827821.1,INSD:BT010740.1"
/note="SWAP (Suppressor-of-White-APricot)/surp RNA-binding
domain-containing protein; FUNCTIONS IN: RNA binding;
INVOLVED IN: RNA processing; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF618
(InterPro:IPR006903), SWAP/Surp (InterPro:IPR000061), RNA
polymerase II, large subunit, CTD (InterPro:IPR006569);
Has 15613 Blast hits to 10676 proteins in 664 species:
Archae - 6; Bacteria - 799; Metazoa - 6418; Fungi - 3065;
Plants - 3018; Viruses - 214; Other Eukaryotes - 2093
(source: NCBI BLink)."
/db_xref="TAIR:AT4G31200"
/db_xref="Araport:AT4G31200"
intron_pos 337:2 (1/2)
intron_pos 428:1 (2/2)
BEGIN
1 MDRRQHDYAA SSGLPYAQQQ QQQGPNFQQQ QQPQFGFHPQ HPQYPSPMNA SGFIPPHPSM
61 QQFPYQHPMH QQQQPQHLPH PPHPQMFGQQ QPQAFLPHLP PHHLPPPFPG PYDSAPPPPP
121 PADPELQKRI DKLVEYSVKN GPEFEAMMRD RQKDNPDYAF LFGGEGHGYY RYKHFLSMHP
181 PGGPFDPPFP SSSMPMIHHP PNPMMSPSMN NVPGALAVPP IRQPPFPPFH DHHQLQQHLP
241 QPHPFAPHAR PDFDQSTHAF RGLSGPLPAD VAMELNGVLG NLNGTKESIK SAKIWFMQRS
301 PFAPALAEAL RDRVFAMDDS DRQMHIVYLA NDILFDSLQR RTNLHEFDNE ALAFRPILGS
361 MLGRIYHFPQ NKEENQSRLE KILQFWASKE VFDQDTISSL EKEMKSGPPA NTFSHSPIIA
421 AHALQRPGML QQPPNSNVSS TMNLEHLTNP VATQQFIPNV MPPGAFPGSI PLNASVPPPT
481 QPPAGEKPPP YPLFPPGLIP GMVRKMQIGS GVPYSPLSPL DIPTVIPPSD TPQSEVLERV
541 SKFFKEIGEV NPSEGPMGSE SQDDYDNYER DSPQRKGGAC IPPPPNLQVD PETGTYADGS
601 TDKKSGSGRL GLGATADPNE PTQYDDVYTS YRKHRSTNYH TSMSARATTR
//