LOCUS AEE85872.1 558 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Class II aminoacyl-tRNA and biotin
synthetases superfamily protein protein.
ACCESSION CP002687-5679
PROTEIN_ID AEE85872.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G31180"
/gene_synonym="F6E21.100"
/gene_synonym="F6E21_100"
/gene_synonym="IBI1"
/gene_synonym="impaired in BABA-induced disease immunity
1"
/inference="Similar to RNA sequence,
EST:INSD:EH930295.1,INSD:CB256739.1,INSD:AV536867.1,
INSD:CB256778.1,INSD:BP619073.1,INSD:BP823854.1,
INSD:EH910045.1,INSD:AV827934.1,INSD:ES018613.1,
INSD:EL163551.1,INSD:DR374236.1,INSD:BP846266.1,
INSD:W43890.1,INSD:BP561474.1,INSD:ES060996.1,
INSD:ES093447.1,INSD:ES204276.1,INSD:BP640857.1,
INSD:EL999108.1,INSD:EL029148.1,INSD:BE529005.1,
INSD:EL322415.1,INSD:ES109887.1,INSD:BP816708.1,
INSD:BE525303.1,INSD:EL053249.1,INSD:ES104919.1,
INSD:BP829091.1,INSD:EL260770.1,INSD:EG480502.1,
INSD:EG445531.1,INSD:EL071075.1,INSD:BX838896.1,
INSD:AV817262.1,INSD:EL111059.1,INSD:H36577.1,
INSD:BP647406.1,INSD:EL218767.1,INSD:EG498095.1,
INSD:BU635772.1,INSD:EL198525.1,INSD:EL151111.1,
INSD:DR205000.1,INSD:DR274041.1,INSD:F14047.1,
INSD:CB262421.1,INSD:BP817411.2,INSD:EL990067.1,
INSD:AV440079.1,INSD:F13974.1,INSD:BP566450.1,
INSD:ES091127.1,INSD:AV522160.1,INSD:BP574235.1,
INSD:AV792316.1,INSD:EH902493.1,INSD:DR205005.1,
INSD:EG498106.1,INSD:BP570380.1,INSD:DR383021.1,
INSD:AV559922.1,INSD:ES049182.1,INSD:EG498040.1,
INSD:EL124677.1,INSD:BP621167.1,INSD:CB185538.1,
INSD:ES021019.1,INSD:ES042505.1,INSD:ES127149.1,
INSD:DR205002.1,INSD:DR205001.1,INSD:ES207763.1,
INSD:ES169570.1,INSD:BP839880.1,INSD:EH972738.1,
INSD:ES028960.1,INSD:EG516426.1,INSD:CB260004.1,
INSD:BP807628.1,INSD:BP671073.1,INSD:EL086412.1,
INSD:EL147439.1,INSD:BP653545.1,INSD:BX834193.1,
INSD:BX836993.1,INSD:AV803960.1,INSD:BP588497.1,
INSD:DR204993.1,INSD:EL047913.1,INSD:BE524782.1,
INSD:DR205003.1,INSD:DR204994.1,INSD:AA651200.1,
INSD:DR205004.1,INSD:EL141302.1,INSD:EL206520.1,
INSD:BP833365.1,INSD:DR355545.1,INSD:BP563443.1,
INSD:EG498028.1,INSD:BP616338.1,INSD:BP662016.1,
INSD:EL190380.1,INSD:EG498051.1,INSD:BP621080.1,
INSD:BP827172.1,INSD:EL113992.1,INSD:DR204998.1,
INSD:EH964037.1,INSD:EL998779.1,INSD:ES180137.1,
INSD:EG480504.1,INSD:BP807656.1,INSD:BP609733.1,
INSD:BP822988.1,INSD:EH936775.1,INSD:EL133644.1,
INSD:EL067298.1,INSD:DR204996.1,INSD:BE037698.1,
INSD:ES181029.1,INSD:EL218464.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX827589.1,INSD:BT002567.1,INSD:AY072331.1"
/note="Class II aminoacyl-tRNA and biotin synthetases
superfamily protein; FUNCTIONS IN: aspartate-tRNA ligase
activity, nucleotide binding, aminoacyl-tRNA ligase
activity, nucleic acid binding, ATP binding; INVOLVED IN:
response to cadmium ion, aspartyl-tRNA aminoacylation;
LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb,
archea/euk type (InterPro:IPR004523), Nucleic
acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid
binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365),
Aminoacyl-tRNA synthetase, class II, conserved domain
(InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA
synthetase, class IIb (InterPro:IPR002312), Nucleic
acid-binding, OB-fold-like (InterPro:IPR016027),
Aminoacyl-tRNA synthetase, class II (D/K/N)
(InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II
(D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis
thaliana protein match is: Class II aminoacyl-tRNA and
biotin synthetases superfamily protein (TAIR:AT4G26870.1);
Has 27000 Blast hits to 21362 proteins in 2984 species:
Archae - 448; Bacteria - 18821; Metazoa - 751; Fungi -
935; Plants - 402; Viruses - 0; Other Eukaryotes - 5643
(source: NCBI BLink)."
/db_xref="TAIR:AT4G31180"
/db_xref="Araport:AT4G31180"
intron_pos 187:0 (1/9)
intron_pos 224:0 (2/9)
intron_pos 262:0 (3/9)
intron_pos 359:0 (4/9)
intron_pos 396:0 (5/9)
intron_pos 414:0 (6/9)
intron_pos 440:2 (7/9)
intron_pos 479:1 (8/9)
intron_pos 517:2 (9/9)
BEGIN
1 MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN
61 DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD LVEEMLESEV LIRGRVHTNR
121 PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL
181 TGTTQQVEIQ VRKVYCINKS LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR
241 VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301 ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM
361 DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT LRLTFEEGVQ MLKEAGVEVD
421 PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE
481 EIISGAQRVH IPEVLEQRAG ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL
541 NNIRKTSLFP RDPQRLSP
//