LOCUS AEE85846.1 405 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding CRS1 / YhbY (CRM) domain-
containing protein protein.
ACCESSION CP002687-5643
PROTEIN_ID AEE85846.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G31010"
/gene_synonym="F6I18.80"
/gene_synonym="F6I18_80"
/gene_synonym="mCSF1"
/gene_synonym="mitochondrial CAF-like splicing factor 1"
/inference="Similar to RNA sequence,
EST:INSD:BX837457.1,INSD:BX838336.1,INSD:AU228024.1,
INSD:BP663347.1,INSD:BP591127.1,INSD:AV822829.1,
INSD:ES184688.1,INSD:ES118014.1,INSD:ES039416.1,
INSD:AV783683.1,INSD:BX834373.1,INSD:EL031466.1,
INSD:ES199327.1,INSD:BX837502.1,INSD:AV831472.1,
INSD:ES209206.1,INSD:CB256680.1,INSD:BP600343.1,
INSD:ES002360.1,INSD:DR383615.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY042864.1,INSD:AY096489.1,INSD:BX827921.1,
INSD:AY072146.1"
/note="RNA-binding CRS1 / YhbY (CRM) domain-containing
protein; FUNCTIONS IN: RNA binding; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain
(InterPro:IPR001890); BEST Arabidopsis thaliana protein
match is: RNA-binding CRS1 / YhbY (CRM) domain-containing
protein (TAIR:AT5G54890.1); Has 267 Blast hits to 236
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 267; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink)."
/db_xref="TAIR:AT4G31010"
/db_xref="Araport:AT4G31010"
intron_pos 183:1 (1/4)
intron_pos 226:0 (2/4)
intron_pos 301:1 (3/4)
intron_pos 344:0 (4/4)
BEGIN
1 MFLIRLSRHN PSSFTLLTRR LHDQTISSSR LRDLYNFQSP PPLSSSASEN PDFNQKNNNK
61 KKPKPQYRPP SSLEGVKTVH SDLPFDFRFS YTESCSNVRP IGLREPKYSP FGPDRLDREW
121 TGVCAPAVNP KVESVDGVED PKLEEKRRKV REKIQGASLT EAERKFLVEL CQRNKTKRQV
181 NLGRDGLTHN MLNDVYNHWK HAEAVRVKCL GVPTLDMKNV IFHLEDKTFG QVVSKHSGTL
241 VLYRGRNYDP KKRPKIPLML WKPHEPVYPR LIKTTIDGLS IDETKAMRKK GLAVPALTKL
301 AKNGYYGSLV PMVRDAFLVS ELVRIDCLGL ERKDYKKIGA KLRDLVPCIL VTFDKEQVVI
361 WRGKDYKPPK EDDEYSSFIH RESSIDSDVD LSCSRGAQDS PDETT
//