LOCUS AEE85739.1 88 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana small nuclear ribonucleoprotein F protein.
ACCESSION CP002687-5491
PROTEIN_ID AEE85739.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="RUXF"
/locus_tag="AT4G30220"
/gene_synonym="F9N11.70"
/gene_synonym="F9N11_70"
/gene_synonym="small nuclear ribonucleoprotein F"
/inference="Similar to RNA sequence,
EST:INSD:DR186648.1,INSD:EL109995.1,INSD:EG500056.1,
INSD:EG512650.1,INSD:DR186650.1,INSD:EL066490.1,
INSD:ES158909.1,INSD:EH909359.1,INSD:DR186655.1,
INSD:EL021079.1,INSD:DR186642.1,INSD:DR186661.1,
INSD:EG500055.1,INSD:DR186663.1,INSD:DR186653.1,
INSD:ES017576.1,INSD:ES032866.1,INSD:ES057968.1,
INSD:DR186643.1,INSD:EH933820.1,INSD:ES040390.1,
INSD:EL969191.1,INSD:DR186658.1,INSD:ES163728.1,
INSD:ES129206.1,INSD:DR186651.1,INSD:DR186649.1,
INSD:DR186662.1,INSD:DR186652.1,INSD:ES000619.1,
INSD:DR375890.1,INSD:DR186646.1,INSD:ES137363.1,
INSD:ES053183.1,INSD:EL081067.1,INSD:DR186656.1,
INSD:DR186644.1,INSD:ES185286.1,INSD:DR186654.1,
INSD:ES159421.1,INSD:EL167939.1,INSD:EH814083.1,
INSD:EL313968.1,INSD:ES215299.1,INSD:AU235689.1,
INSD:AA712720.1,INSD:DR186657.1,INSD:DR186660.1,
INSD:DR186664.1,INSD:EL238384.1,INSD:EL993339.1,
INSD:EH932964.1,INSD:DR186645.1,INSD:EL161654.1,
INSD:AU226429.1,INSD:ES193978.1,INSD:EH887768.1,
INSD:BP819244.1,INSD:DR186659.1,INSD:EH961292.1,
INSD:ES161798.1,INSD:ES192403.1,INSD:BP858030.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY087616.1,INSD:AK227757.1"
/note="small nuclear ribonucleoprotein F (RUXF); FUNCTIONS
IN: molecular_function unknown; LOCATED IN: nucleolus,
nucleus, small nucleolar ribonucleoprotein complex;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear
ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm
ribonucleoprotein (LSM) domain (InterPro:IPR001163),
Like-Sm ribonucleoprotein (LSM)-related domain
(InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM)
domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST
Arabidopsis thaliana protein match is: Small nuclear
ribonucleoprotein family protein (TAIR:AT2G14285.1); Has
1186 Blast hits to 1186 proteins in 302 species: Archae -
341; Bacteria - 0; Metazoa - 298; Fungi - 260; Plants -
126; Viruses - 0; Other Eukaryotes - 161 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G30220"
/db_xref="Araport:AT4G30220"
intron_pos 3:0 (1/4)
intron_pos 32:1 (2/4)
intron_pos 45:0 (3/4)
intron_pos 66:2 (4/4)
BEGIN
1 MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL
61 GEILIRCNNV LYVRGVPEDE ELEDADQD
//