LOCUS AEE85586.1 407 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-
binding superfamily protein protein.
ACCESSION CP002687-5295
PROTEIN_ID AEE85586.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G29100"
/gene_synonym="F19B15.130"
/gene_synonym="F19B15_130"
/inference="Similar to RNA sequence,
EST:INSD:ES028463.1,INSD:AV786542.1,INSD:AA586184.1,
INSD:F14393.1,INSD:DR240756.1,INSD:EH938255.1,
INSD:W43212.1,INSD:DR240755.1,INSD:EL028502.1,
INSD:ES000391.1,INSD:BX835079.1,INSD:EL101939.1,
INSD:ES066796.1,INSD:DR355667.1,INSD:T20556.1,
INSD:AV827825.1,INSD:ES068383.1,INSD:ES022095.1,
INSD:ES079167.1,INSD:ES212514.1,INSD:BP638712.1,
INSD:EH921300.1,INSD:EH813914.1,INSD:ES122189.1,
INSD:BP780958.1,INSD:AV518840.1,INSD:AV792549.1,
INSD:AI992804.1,INSD:BX834882.1,INSD:AV785748.1,
INSD:F14392.1,INSD:EG499433.1,INSD:ES103657.1,
INSD:AV541381.1,INSD:EL073875.1,INSD:DR355666.1,
INSD:AV544587.1,INSD:AV552915.1,INSD:AV825834.1,
INSD:EG458348.1,INSD:ES043195.1,INSD:BP587213.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY081316.1,INSD:BT000121.1,INSD:BX827461.1,
INSD:AF488634.2"
/note="basic helix-loop-helix (bHLH) DNA-binding
superfamily protein; FUNCTIONS IN: sequence-specific DNA
binding transcription factor activity; INVOLVED IN:
regulation of transcription; LOCATED IN: nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10
growth stages; CONTAINS InterPro DOMAIN/s:
Helix-loop-helix DNA-binding domain (InterPro:IPR001092),
Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST
Arabidopsis thaliana protein match is: basic
helix-loop-helix (bHLH) DNA-binding superfamily protein
(TAIR:AT2G20100.1); Has 1864 Blast hits to 1723 proteins
in 84 species: Archae - 0; Bacteria - 0; Metazoa - 76;
Fungi - 29; Plants - 923; Viruses - 0; Other Eukaryotes -
836 (source: NCBI BLink)."
/db_xref="TAIR:AT4G29100"
/db_xref="Araport:AT4G29100"
intron_pos 110:2 (1/7)
intron_pos 237:0 (2/7)
intron_pos 264:0 (3/7)
intron_pos 286:0 (4/7)
intron_pos 308:0 (5/7)
intron_pos 328:0 (6/7)
intron_pos 343:0 (7/7)
BEGIN
1 MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLMGHQQ APLPPHMTPN NNYLRPRMMP
61 TPFPHFLPSP ATSSSSSSSS PSLPNNPNLS SWLESNDLPP ESWSLSQLLL GGLMMGEEER
121 LEMMNHHNHH DEQQHHGFQG KIRLENWEEQ VLSHQQASMV AVDIKQEGNI NNNNGYVISS
181 PNSPPNKSCV TTTTTTSLNS NDDNINNNNN MLDFSSNHNG LHLSEGRHTP PDRSSECNSL
241 EIGGSTNKKP RLQPSPSSQS TLKVRKEKLG GRIAALHQLV SPFGKTDTAS VLSEAIGYIR
301 FLQSQIEALS HPYFGTTASG NMRHQQHLQG DRSCIFPEDP GQLVNDQCMK RRGASSSSTD
361 NQNASEEPKK DLRSRGLCLV PISCTLQVGS DNGADYWAPA LGSAGFH
//