LOCUS AEE85414.1 178 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana ubiquitin conjugating enzyme 9 protein.
ACCESSION CP002687-5061
PROTEIN_ID AEE85414.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="UBC9"
/locus_tag="AT4G27960"
/gene_synonym="T13J8.70"
/gene_synonym="T13J8_70"
/gene_synonym="ubiquitin conjugating enzyme 9"
/gene_synonym="UBIQUITIN-PROTEIN LIGASE"
/inference="Similar to RNA sequence,
EST:INSD:BP627263.1,INSD:ES120738.1,INSD:BP654478.1,
INSD:ES066473.1,INSD:EH859627.1,INSD:ES200218.1,
INSD:ES102183.1,INSD:ES031636.1,INSD:BP580126.1,
INSD:EH844738.1,INSD:BP808577.1,INSD:EL974365.1,
INSD:BP578474.1,INSD:EL170449.1,INSD:R65353.1,
INSD:EL172845.1,INSD:BP621691.1,INSD:Z18473.1,
INSD:BP584615.1,INSD:ES064219.1,INSD:EL236667.1,
INSD:EL271532.1,INSD:BP573280.1,INSD:EH891691.1,
INSD:BP600483.1,INSD:ES201654.1,INSD:EL208551.1,
INSD:BP563951.1,INSD:BP780162.1,INSD:ES163441.1,
INSD:ES053835.1,INSD:BP621764.1,INSD:BP599728.1,
INSD:BP570566.1,INSD:ES081309.1,INSD:EL228911.1,
INSD:EH970468.1,INSD:ES124158.1,INSD:EL253705.1,
INSD:ES154493.1,INSD:CF653110.1,INSD:CF651856.1,
INSD:EL013672.1,INSD:EL292868.1,INSD:EH873574.1,
INSD:ES109856.1,INSD:EH981716.1,INSD:AV531110.1,
INSD:BP572249.1,INSD:EH981577.1,INSD:EL204477.1,
INSD:ES143704.1,INSD:EL231585.1,INSD:ES153214.1,
INSD:EH864070.1,INSD:EH933728.1,INSD:AV534450.1,
INSD:BP616752.1,INSD:EL174140.1,INSD:EH936726.1,
INSD:ES184473.1,INSD:R65363.1,INSD:EL256371.1,
INSD:BP568827.1,INSD:EH902714.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY142644.1,INSD:L00639.1,INSD:Z14990.1,
INSD:AF325019.2,INSD:DQ027023.1,INSD:X72626.1"
/note="ubiquitin conjugating enzyme 9 (UBC9); FUNCTIONS
IN: ubiquitin-protein ligase activity; INVOLVED IN:
ubiquitin-dependent protein catabolic process; LOCATED IN:
endomembrane system; EXPRESSED IN: male gametophyte,
pollen tube; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage; CONTAINS InterPro DOMAIN/s:
Ubiquitin-conjugating enzyme/RWD-like
(InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2
(InterPro:IPR000608); BEST Arabidopsis thaliana protein
match is: ubiquitin-conjugating enzyme 10
(TAIR:AT5G53300.4); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G27960"
/db_xref="Araport:AT4G27960"
intron_pos 54:1 (1/3)
intron_pos 97:0 (2/3)
intron_pos 132:0 (3/3)
BEGIN
1 MFFFFLIHLT IGLVFDCRVF NWNLDRGILE MASKRILKEL KDLQKDPPTS CSAGPVAEDM
61 FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK
121 EQWSPALTIS KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTART WTQKYAMG
//