LOCUS AEE85404.1 327 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Protein with RING/U-box and TRAF-
like domain protein.
ACCESSION CP002687-5053
PROTEIN_ID AEE85404.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G27880"
/gene_synonym="T27E11.120"
/gene_synonym="T27E11_120"
/inference="Similar to RNA sequence,
EST:INSD:BP801013.1,INSD:AA605385.1,INSD:ES196294.1,
INSD:EH970578.1,INSD:BP802708.1,INSD:EL023681.1,
INSD:EL195611.1,INSD:R89927.1,INSD:BP856241.1,
INSD:DR384097.1,INSD:EH872127.1,INSD:EG501563.1,
INSD:EL023059.1,INSD:AU226449.1,INSD:BP823009.1,
INSD:BP801090.1,INSD:BP830829.1,INSD:ES095006.1,
INSD:BP819035.1,INSD:BP652203.1,INSD:BP621072.1,
INSD:EH926366.1,INSD:ES124729.1,INSD:ES025841.1,
INSD:ES186216.1,INSD:BP611973.1,INSD:DR368323.1,
INSD:BP601813.1,INSD:EL975282.1,INSD:BP823908.1,
INSD:BX838776.1,INSD:BP596886.1,INSD:BP803266.1,
INSD:BP601723.1,INSD:BP799659.1,INSD:EH941438.1,
INSD:BP801781.1,INSD:ES117349.1,INSD:EL969824.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX828435.1,INSD:BT033078.1,INSD:BX828249.1,
INSD:BX826575.1,INSD:BX826742.1"
/note="Protein with RING/U-box and TRAF-like domains;
FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion
binding; INVOLVED IN: multicellular organismal
development, protein ubiquitination, ubiquitin-dependent
protein catabolic process; LOCATED IN: mitochondrion,
nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
TRAF-like (InterPro:IPR008974), Seven-in-absentia protein,
TRAF-like domain (InterPro:IPR018121), Zinc finger,
RING-type (InterPro:IPR001841), Zinc finger, SIAH-type
(InterPro:IPR013010), Seven In Absentia Homolog-type
(InterPro:IPR013323), Seven-in-absentia protein, sina
(InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST
Arabidopsis thaliana protein match is: Protein with
RING/U-box and TRAF-like domains (TAIR:AT3G61790.1); Has
1768 Blast hits to 1750 proteins in 698 species: Archae -
0; Bacteria - 0; Metazoa - 1225; Fungi - 9; Plants - 484;
Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink)."
/db_xref="TAIR:AT4G27880"
/db_xref="Araport:AT4G27880"
intron_pos 78:0 (1/2)
intron_pos 207:0 (2/2)
BEGIN
1 METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE
61 LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR QELGDIRCLA LEKVAESLEL
121 PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM
181 HAGSTFNHRY VKSNPREVEN ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE
241 EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301 KLRVTGKIWK EQHSPDSGLS IPNLSSS
//