LOCUS AEE85263.1 532 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Class II aminoacyl-tRNA and biotin
synthetases superfamily protein protein.
ACCESSION CP002687-4857
PROTEIN_ID AEE85263.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G26870"
/gene_synonym="F10M23.210"
/gene_synonym="F10M23_210"
/inference="Similar to RNA sequence,
EST:INSD:EH962297.1,INSD:BP859578.1,INSD:EH881306.1,
INSD:EL974435.1,INSD:EL980751.1,INSD:BP790443.1,
INSD:ES072837.1,INSD:BP588768.1,INSD:BP613412.1,
INSD:AA720362.1,INSD:EL143988.1,INSD:ES008572.1,
INSD:DR293095.1,INSD:EG513971.1,INSD:ES021789.1,
INSD:ES072480.1,INSD:EG468002.1,INSD:ES062739.1,
INSD:DR293096.1,INSD:ES035617.1,INSD:BP848154.1,
INSD:ES169255.1,INSD:EG468003.1,INSD:EH818755.1,
INSD:BP598450.1,INSD:EH945759.1,INSD:EH919137.1,
INSD:ES119140.1,INSD:AV821705.1,INSD:EH982650.1,
INSD:AV796793.1,INSD:EH964536.1,INSD:EH907297.1,
INSD:EL997586.1,INSD:ES080612.1,INSD:ES025193.1,
INSD:BP596243.1,INSD:EL098853.1,INSD:CF773390.1,
INSD:AV800866.1,INSD:EL970490.1,INSD:EL186612.1,
INSD:ES165018.1,INSD:EL265215.1,INSD:DR293093.1,
INSD:BP780323.1,INSD:EH962732.1,INSD:DR293094.1,
INSD:ES197833.1,INSD:EH950339.1,INSD:AV557955.1,
INSD:ES016087.1,INSD:ES090364.1,INSD:ES151655.1,
INSD:DR293098.1,INSD:AV786117.1,INSD:EL040833.1,
INSD:BP810577.1,INSD:Z34062.1,INSD:ES208109.1,
INSD:DR293097.1,INSD:EL994619.1,INSD:EL155670.1,
INSD:EG514134.1,INSD:ES130115.1,INSD:DR293092.1,
INSD:ES095634.1,INSD:EL971300.1,INSD:BP562927.1,
INSD:AV810467.1,INSD:ES059046.1,INSD:ES159961.1,
INSD:EL257648.1,INSD:ES007571.1,INSD:BP842552.1,
INSD:EL047657.1,INSD:EL182059.1,INSD:CB256040.1,
INSD:EL997661.1,INSD:BE524140.1,INSD:EH962628.1,
INSD:CF773547.1,INSD:EL984763.1,INSD:DR379705.1,
INSD:BX837197.1,INSD:EL053886.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY063809.1,INSD:BX827509.1,INSD:AK229037.1,
INSD:BT000939.1"
/note="Class II aminoacyl-tRNA and biotin synthetases
superfamily protein; FUNCTIONS IN: aspartate-tRNA ligase
activity, nucleotide binding, aminoacyl-tRNA ligase
activity, nucleic acid binding, ATP binding; INVOLVED IN:
response to cadmium ion, tRNA aminoacylation for protein
translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb,
archea/euk type (InterPro:IPR004523), Nucleic
acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid
binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365),
Aminoacyl-tRNA synthetase, class II, conserved domain
(InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA
synthetase, class IIb (InterPro:IPR002312), Nucleic
acid-binding, OB-fold-like (InterPro:IPR016027),
Aminoacyl-tRNA synthetase, class II (D/K/N)
(InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II
(D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis
thaliana protein match is: Class II aminoacyl-tRNA and
biotin synthetases superfamily protein (TAIR:AT4G31180.2);
Has 28683 Blast hits to 22852 proteins in 2993 species:
Archae - 454; Bacteria - 19619; Metazoa - 777; Fungi -
1015; Plants - 410; Viruses - 0; Other Eukaryotes - 6408
(source: NCBI BLink)."
/db_xref="TAIR:AT4G26870"
/db_xref="Araport:AT4G26870"
intron_pos 161:0 (1/8)
intron_pos 198:0 (2/8)
intron_pos 236:0 (3/8)
intron_pos 333:0 (4/8)
intron_pos 370:0 (5/8)
intron_pos 388:0 (6/8)
intron_pos 453:1 (7/8)
intron_pos 491:2 (8/8)
BEGIN
1 MVGSEVLEEC GEKISKKESK KRAAKLEKLL RKQEREEATS SSLSLEEEDE SCSSNYGDVT
61 TNELQSAVEG KELTDVSNLV EEIVGSEVSI RGRLHKNRLV GTKLFVILRE SGFTVQCVVE
121 ETRVGANMIK FVKQLSRESV VELIGVVSHP KKPLTGTTQQ VEIHVRKMYC LSRSLPNLPL
181 VVEDAARSES DIEKSGKDGK QAARVLQDTR LNNRVLDIRT PANQAIFRIQ CQVQIAFREY
241 LQSKGFLEIH TPKLIAGSSE GGSAVFRLDY KGQPACLAQS PQLHKQMAIC GDMRRVFEVG
301 PVFRAEDSFT HRHLCEFVGL DVEMEIRMHY SEIMDLVGEL FPFIFTKIEE RCPKELESVR
361 KQYPFQSLKF LPQTLRLTFA EGIQMLKEAG EEVDPLGDLN TESERKLGQL VLEKYKTEFY
421 MLHRYPSAVR PFYTMPYEND SNYSNSFDVF IRGEEIMSGA QRIHDPELLE KRARECGIDV
481 KTISTYIDAF RYGAPPHGGF GVGLERVVML LCALNNIRKT SLFPRDSQRL TP
//