LOCUS AEE85248.1 421 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana hydroxyproline-rich glycoprotein
family protein protein.
ACCESSION CP002687-4839
PROTEIN_ID AEE85248.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="EXT-like"
/locus_tag="AT4G26750"
/gene_synonym="extensin-like"
/gene_synonym="F10M23.90"
/gene_synonym="F10M23_90"
/gene_synonym="homolog of mammalian LYST-INTERACTING
PROTEIN5"
/gene_synonym="LIP5"
/inference="Similar to RNA sequence,
EST:INSD:DR272939.1,INSD:DR272936.1,INSD:BP661276.1,
INSD:AI994725.1,INSD:ES097552.1,INSD:ES205204.1,
INSD:BE521530.1,INSD:T46339.1,INSD:AV790664.1,
INSD:BP592387.1,INSD:N37698.1,INSD:EL220893.1,
INSD:BP793006.1,INSD:AV783935.1,INSD:CF652767.1,
INSD:EH837580.1,INSD:BP670799.1,INSD:EL003084.1,
INSD:EL248065.1,INSD:BX839391.1,INSD:ES135394.1,
INSD:DR272938.1,INSD:AV534105.1,INSD:ES202448.1,
INSD:AV823039.1,INSD:DR272941.1,INSD:DR272934.1,
INSD:DR233391.1,INSD:EL042367.1,INSD:CB256830.1,
INSD:DR272935.1,INSD:DR373300.1,INSD:AV788687.1,
INSD:DR272942.1,INSD:AV552602.1,INSD:DR272943.1,
INSD:EL338690.1,INSD:BP810099.1,INSD:ES000870.1,
INSD:AV544134.1,INSD:BP653695.1,INSD:EL319844.1,
INSD:AA404836.1,INSD:AV541642.1,INSD:ES095945.1,
INSD:EH906036.1,INSD:DR272940.1,INSD:BX835661.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX828244.1,INSD:BX826728.1,INSD:BX826584.1,
INSD:BX828334.1,INSD:BX828199.1,INSD:AY048219.1,
INSD:BX827333.1,INSD:BX827593.1,INSD:AY094009.1,
INSD:BX826538.1,INSD:BX826452.1"
/note="hydroxyproline-rich glycoprotein family protein;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana
protein match is: glucan synthase-like 11
(TAIR:AT3G59100.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink)."
/db_xref="TAIR:AT4G26750"
/db_xref="Araport:AT4G26750"
intron_pos 32:1 (1/5)
intron_pos 66:0 (2/5)
intron_pos 102:2 (3/5)
intron_pos 128:0 (4/5)
intron_pos 176:0 (5/5)
BEGIN
1 MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI
61 NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA DLGTAKTFYA ASIFFEILSQ
121 FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS
181 DTNTTSHHRT ELDPPHDSND DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP
241 SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301 SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP
361 SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST AVEHLKKSLE LLTNPSAGAG
421 H
//