LOCUS AEE85233.1 452 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002687-4819
PROTEIN_ID AEE85233.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G26650"
/gene_synonym="T15N24.100"
/gene_synonym="T15N24_100"
/inference="Similar to RNA sequence,
EST:INSD:DR356404.1,INSD:DR227169.1,INSD:EH956896.1,
INSD:DR227155.1,INSD:Z24471.1,INSD:BP605806.1,
INSD:DR227147.1,INSD:EL179359.1,INSD:DR227159.1,
INSD:DR227153.1,INSD:AV539286.1,INSD:DR227148.1,
INSD:DR227168.1,INSD:DR383099.1,INSD:AV817185.1,
INSD:DR227164.1,INSD:EL298780.1,INSD:DR227158.1,
INSD:DR227166.1,INSD:EL147260.1,INSD:EH864208.1,
INSD:DR226050.1,INSD:AV439621.1,INSD:DR356407.1,
INSD:DR227151.1,INSD:ES084111.1,INSD:ES003460.1,
INSD:BP790196.1,INSD:BP607636.1,INSD:EL168634.1,
INSD:AV567484.1,INSD:DR227152.1,INSD:EL340515.1,
INSD:ES189355.1,INSD:EH841084.1,INSD:ES107296.1,
INSD:BP566514.1,INSD:BP847070.1,INSD:DR227161.1,
INSD:DR227167.1,INSD:BP610645.1,INSD:EL087081.1,
INSD:ES004120.1,INSD:AV817967.1,INSD:BP587227.1,
INSD:AV539782.1,INSD:DR227150.1,INSD:EL157873.1,
INSD:EH871372.1,INSD:EL331484.1,INSD:AV441731.1,
INSD:DR356406.1,INSD:EL318871.1,INSD:DR227154.1,
INSD:EL975181.1,INSD:DR227144.1,INSD:EH862742.1,
INSD:DR382848.1,INSD:BP661951.1,INSD:T21874.1,
INSD:AV796360.1,INSD:DR227170.1,INSD:DR227171.1,
INSD:DR356408.1,INSD:DR227163.1,INSD:EL080066.1,
INSD:DR383091.1,INSD:DR227146.1,INSD:EH917676.1,
INSD:EH983452.1,INSD:EL278166.1,INSD:AV813467.1,
INSD:ES017736.1,INSD:BP664014.1,INSD:AI995401.1,
INSD:DR227156.1,INSD:DR227157.1,INSD:EG446166.1,
INSD:DR227145.1,INSD:AV806283.1,INSD:DR227149.1,
INSD:EL267754.1,INSD:DR227162.1,INSD:EH916598.1"
/inference="Similar to RNA sequence, mRNA:INSD:AJ002414.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA
recognition motif, RNP-1 (InterPro:IPR000504),
Nucleotide-binding, alpha-beta plait (InterPro:IPR012677);
BEST Arabidopsis thaliana protein match is: RNA-binding
(RRM/RBD/RNP motifs) family protein (TAIR:AT5G55550.4);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink)."
/db_xref="TAIR:AT4G26650"
/db_xref="Araport:AT4G26650"
intron_pos 2:0 (1/3)
intron_pos 81:0 (2/3)
intron_pos 449:1 (3/3)
BEGIN
1 MEQKMESASD LGKLFIGGIS WDTDEERLQE YFGKYGDLVE AVIMRDRTTG RARGFGFIVF
61 ADPSVAERVI MDKHIIDGRT VEAKKAVPRD DQQVLKRHAS PMHLISPSHG GNGGGARTKK
121 IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT
181 FHELNGKMVE VKRAVPKELS STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN
241 LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301 PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG
361 AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM PHHQSSNELD GLSRSYGFGI
421 DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
//